JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IRS2_chr13_109747695_109791583	0/0	c0013	4017	2	0	0	2	0	0	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	c0014	4017	1	0	1	0	0	0	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	c0015	4017	1	1	0	0	0	0	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	c0016	4017	1	1	0	0	0	0	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	c0017	4017	1	0	0	0	1	0	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	c0018	4017	1	1	0	0	0	0	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	c0019	4043	1	0	0	1	0	0	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	c0020	4017	1	0	0	0	0	1	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	c0021	4017	1	0	1	0	0	0	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	c0022	4017	1	1	0	0	0	0	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	c0023	4017	1	1	0	0	0	0	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	c0024	4017	1	1	0	0	0	0	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	c0025	4018	1	0	0	1	0	0	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	c0026	4017	1	1	0	0	0	0	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	c0027	4017	1	0	0	0	0	1	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	c0028	4017	1	0	0	1	0	0	copy fasta	IRS2	chr13	109747695	109791583
IRS2_chr13_109747695_109791583	0/0	c0029	4017	1	0	0	1	0	0	copy fasta	IRS2	chr13	109747695	109791583
IRS4_chrX_108714946_108741563	0/0	c0001	3771	137	17	21	89	0	10	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	1/1	c0002	3771	105	16	24	43	7	13	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	c0003	3771	14	14	0	0	0	0	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	c0004	3771	11	11	0	0	0	0	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	c0005	3771	9	0	3	0	2	4	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	c0006	3771	6	6	0	0	0	0	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	c0007	3771	6	1	0	4	0	1	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	c0008	3771	5	4	0	1	0	0	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	c0009	3771	3	3	0	0	0	0	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	c0010	3771	3	3	0	0	0	0	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	c0011	3770	1	0	0	1	0	0	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	c0012	3771	1	0	0	1	0	0	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	c0013	3771	1	0	0	1	0	0	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	c0014	3772	1	0	0	0	0	1	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	c0015	3770	1	0	0	1	0	0	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	c0016	3771	1	0	0	1	0	0	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	c0017	3771	1	0	0	0	0	1	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	c0018	3771	1	1	0	0	0	0	copy fasta	IRS4	chrX	108714946	108741563
IRS4_chrX_108714946_108741563	0/0	c0019	3772	1	0	1	0	0	0	copy fasta	IRS4	chrX	108714946	108741563
IRX1_chr5_3590832_3606403	0/1	c0001	1443	336	84	55	154	16	26	copy fasta	IRX1	chr5	3590832	3606403
IRX1_chr5_3590832_3606403	1/0	c0002	1443	79	7	11	48	0	12	copy fasta	IRX1	chr5	3590832	3606403
IRX1_chr5_3590832_3606403	0/0	c0003	1443	30	0	19	1	0	10	copy fasta	IRX1	chr5	3590832	3606403
IRX1_chr5_3590832_3606403	0/0	c0004	1443	3	3	0	0	0	0	copy fasta	IRX1	chr5	3590832	3606403
IRX1_chr5_3590832_3606403	0/0	c0005	1443	1	0	1	0	0	0	copy fasta	IRX1	chr5	3590832	3606403
IRX1_chr5_3590832_3606403	0/0	c0006	1443	1	0	0	1	0	0	copy fasta	IRX1	chr5	3590832	3606403
IRX1_chr5_3590832_3606403	0/0	c0007	1443	1	1	0	0	0	0	copy fasta	IRX1	chr5	3590832	3606403
IRX1_chr5_3590832_3606403	0/0	c0008	1443	1	0	0	1	0	0	copy fasta	IRX1	chr5	3590832	3606403
IRX1_chr5_3590832_3606403	0/0	c0009	1443	1	0	0	1	0	0	copy fasta	IRX1	chr5	3590832	3606403
IRX1_chr5_3590832_3606403	0/0	c0010	1443	1	0	0	1	0	0	copy fasta	IRX1	chr5	3590832	3606403
IRX1_chr5_3590832_3606403	0/0	c0011	1443	1	1	0	0	0	0	copy fasta	IRX1	chr5	3590832	3606403
IRX1_chr5_3590832_3606403	0/0	c0012	1443	1	0	0	1	0	0	copy fasta	IRX1	chr5	3590832	3606403
IRX2_chr5_2741165_2756677	1/1	c0001	1416	361	78	70	167	13	31	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	c0002	1416	41	1	5	14	3	18	copy fasta	IRX2	chr5	2741165	2756677