JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IRX2_chr5_2741165_2756677	0/0	c0003	1416	11	0	0	11	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	c0004	1416	6	5	1	0	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	c0005	1416	5	4	1	0	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	c0006	1416	2	2	0	0	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	c0007	1416	1	0	0	1	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	c0008	1416	1	1	0	0	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	c0009	1416	1	1	0	0	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	c0010	1416	1	1	0	0	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	c0011	1416	1	0	0	0	0	1	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	c0012	1390	1	0	0	1	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	c0013	1416	1	0	1	0	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	c0014	1416	1	0	0	1	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	c0015	1416	1	0	0	1	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX2_chr5_2741165_2756677	0/0	c0016	1416	1	1	0	0	0	0	copy fasta	IRX2	chr5	2741165	2756677
IRX3_chr16_54278304_54291787	0/1	c0001	1506	319	60	55	157	10	36	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	c0002	1506	45	22	10	1	6	6	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	1/0	c0003	1506	11	10	0	0	0	0	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	c0004	1506	3	2	1	0	0	0	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	c0005	1506	2	2	0	0	0	0	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	c0006	1506	2	0	0	1	0	1	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	c0007	1506	1	0	1	0	0	0	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	c0008	1506	1	0	0	1	0	0	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	c0009	1506	1	0	1	0	0	0	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	c0010	1506	1	0	1	0	0	0	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	c0011	1506	1	0	0	0	0	1	copy fasta	IRX3	chr16	54278304	54291787
IRX3_chr16_54278304_54291787	0/0	c0012	1506	1	0	1	0	0	0	copy fasta	IRX3	chr16	54278304	54291787
IRX4_chr5_1872413_1887925	1/0	c0001	1560	137	18	31	67	8	12	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	c0002	1560	124	22	26	59	3	14	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	c0003	1560	79	4	2	59	2	12	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	c0004	1560	28	19	3	0	3	3	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	c0005	1560	21	8	6	3	1	3	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/1	c0006	1560	13	6	5	0	1	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	c0007	1560	8	6	2	0	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	c0008	1560	7	5	1	0	0	1	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	c0009	1560	4	4	0	0	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	c0010	1560	2	2	0	0	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	c0011	1560	2	2	0	0	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	c0012	1560	2	0	0	2	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	c0013	1560	1	1	0	0	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	c0014	1560	1	1	0	0	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	c0015	1560	1	0	0	1	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	c0016	1560	1	0	0	0	0	1	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	c0017	1560	1	1	0	0	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	c0018	1560	1	0	0	1	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	c0019	1560	1	0	0	1	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	c0020	1560	1	1	0	0	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX4_chr5_1872413_1887925	0/0	c0021	1560	1	0	0	1	0	0	copy fasta	IRX4	chr5	1872413	1887925
IRX5_chr16_54925865_54939485	1/1	c0001	1452	191	39	38	82	10	20	copy fasta	IRX5	chr16	54925865	54939485
IRX5_chr16_54925865_54939485	0/0	c0002	1452	133	18	26	72	3	14	copy fasta	IRX5	chr16	54925865	54939485
IRX5_chr16_54925865_54939485	0/0	c0003	1452	19	19	0	0	0	0	copy fasta	IRX5	chr16	54925865	54939485