JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IRX5_chr16_54925865_54939485	0/0	c0004	1453	17	2	3	9	0	3	copy fasta	IRX5	chr16	54925865	54939485
IRX5_chr16_54925865_54939485	0/0	c0005	1453	16	3	6	2	0	5	copy fasta	IRX5	chr16	54925865	54939485
IRX5_chr16_54925865_54939485	0/0	c0006	1452	7	6	0	0	1	0	copy fasta	IRX5	chr16	54925865	54939485
IRX5_chr16_54925865_54939485	0/0	c0007	1452	3	3	0	0	0	0	copy fasta	IRX5	chr16	54925865	54939485
IRX5_chr16_54925865_54939485	0/0	c0008	1452	1	0	0	1	0	0	copy fasta	IRX5	chr16	54925865	54939485
IRX5_chr16_54925865_54939485	0/0	c0009	1452	1	0	0	0	0	1	copy fasta	IRX5	chr16	54925865	54939485
IRX5_chr16_54925865_54939485	0/0	c0010	1452	1	0	1	0	0	0	copy fasta	IRX5	chr16	54925865	54939485
IRX5_chr16_54925865_54939485	0/0	c0011	1452	1	0	0	0	0	1	copy fasta	IRX5	chr16	54925865	54939485
IRX6_chr16_55319203_55335756	1/1	c0001	1341	361	82	76	138	16	47	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	c0002	1341	40	0	0	40	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	c0003	1341	18	0	1	17	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	c0004	1341	4	4	0	0	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	c0005	1341	4	4	0	0	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	c0006	1341	4	0	0	3	0	1	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	c0007	1341	2	0	0	2	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	c0008	1341	2	2	0	0	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	c0009	1341	2	2	0	0	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	c0010	1341	1	0	0	1	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	c0011	1341	1	0	1	0	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	c0012	1341	1	1	0	0	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	c0013	1341	1	0	1	0	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	c0014	1341	1	0	1	0	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	c0015	1341	1	0	0	1	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	c0016	1341	1	1	0	0	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	c0017	1341	1	0	0	1	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	c0018	1341	1	1	0	0	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	c0019	1341	1	0	0	1	0	0	copy fasta	IRX6	chr16	55319203	55335756
IRX6_chr16_55319203_55335756	0/0	c0020	1341	1	1	0	0	0	0	copy fasta	IRX6	chr16	55319203	55335756
ISCA1_chr9_86259546_86287538	1/1	c0001	390	406	91	69	186	18	40	copy fasta	ISCA1	chr9	86259546	86287538
ISCA1_chr9_86259546_86287538	0/0	c0002	390	3	0	1	0	0	2	copy fasta	ISCA1	chr9	86259546	86287538
ISCA1_chr9_86259546_86287538	0/0	c0003	390	1	1	0	0	0	0	copy fasta	ISCA1	chr9	86259546	86287538
ISCA2_chr14_74488765_74502106	1/1	c0001	465	430	96	77	197	18	40	copy fasta	ISCA2	chr14	74488765	74502106
ISCA2_chr14_74488765_74502106	0/0	c0002	465	1	0	0	1	0	0	copy fasta	ISCA2	chr14	74488765	74502106
ISCA2_chr14_74488765_74502106	0/0	c0003	465	1	0	1	0	0	0	copy fasta	ISCA2	chr14	74488765	74502106
ISCU_chr12_108557596_108574368	0/1	c0001	504	209	26	29	115	8	30	copy fasta	ISCU	chr12	108557596	108574368
ISCU_chr12_108557596_108574368	0/0	c0002	504	178	51	32	78	3	14	copy fasta	ISCU	chr12	108557596	108574368
ISCU_chr12_108557596_108574368	1/0	c0003	504	35	4	9	17	2	2	copy fasta	ISCU	chr12	108557596	108574368
ISCU_chr12_108557596_108574368	0/0	c0004	504	11	11	0	0	0	0	copy fasta	ISCU	chr12	108557596	108574368
ISCU_chr12_108557596_108574368	0/0	c0005	504	4	4	0	0	0	0	copy fasta	ISCU	chr12	108557596	108574368
ISCU_chr12_108557596_108574368	0/0	c0006	504	4	0	0	4	0	0	copy fasta	ISCU	chr12	108557596	108574368
ISCU_chr12_108557596_108574368	0/0	c0007	504	2	0	0	0	1	1	copy fasta	ISCU	chr12	108557596	108574368
ISCU_chr12_108557596_108574368	0/0	c0008	504	1	1	0	0	0	0	copy fasta	ISCU	chr12	108557596	108574368
ISCU_chr12_108557596_108574368	0/0	c0009	504	1	1	0	0	0	0	copy fasta	ISCU	chr12	108557596	108574368
ISCU_chr12_108557596_108574368	0/0	c0010	504	1	0	0	0	0	1	copy fasta	ISCU	chr12	108557596	108574368
ISG15_chr1_1008497_1019540	0/1	c0001	498	216	24	41	118	6	26	copy fasta	ISG15	chr1	1008497	1019540
ISG15_chr1_1008497_1019540	0/0	c0002	498	104	31	21	24	10	18	copy fasta	ISG15	chr1	1008497	1019540
ISG15_chr1_1008497_1019540	1/0	c0003	498	44	30	7	4	1	1	copy fasta	ISG15	chr1	1008497	1019540
ISG15_chr1_1008497_1019540	0/0	c0004	498	7	3	1	3	0	0	copy fasta	ISG15	chr1	1008497	1019540
ISG15_chr1_1008497_1019540	0/0	c0005	498	6	5	0	0	1	0	copy fasta	ISG15	chr1	1008497	1019540
ISG15_chr1_1008497_1019540	0/0	c0006	498	1	1	0	0	0	0	copy fasta	ISG15	chr1	1008497	1019540