JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ISG15_chr1_1008497_1019540	0/0	c0007	498	1	1	0	0	0	0	copy fasta	ISG15	chr1	1008497	1019540
ISG15_chr1_1008497_1019540	0/0	c0008	498	1	0	0	1	0	0	copy fasta	ISG15	chr1	1008497	1019540
ISG15_chr1_1008497_1019540	0/0	c0009	498	1	1	0	0	0	0	copy fasta	ISG15	chr1	1008497	1019540
ISG15_chr1_1008497_1019540	0/0	c0010	498	1	0	0	0	0	1	copy fasta	ISG15	chr1	1008497	1019540
ISG20L2_chr1_156716895_156733766	1/1	c0001	1062	322	70	54	136	18	42	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	c0002	1062	70	16	26	22	0	6	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	c0003	1062	6	6	0	0	0	0	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	c0004	1062	3	1	0	1	0	1	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	c0005	1062	1	0	0	0	0	1	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	c0006	1062	1	0	0	1	0	0	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20L2_chr1_156716895_156733766	0/0	c0007	1062	1	1	0	0	0	0	copy fasta	ISG20L2	chr1	156716895	156733766
ISG20_chr15_88634016_88661483	0/1	c0001	546	324	72	54	154	10	33	copy fasta	ISG20	chr15	88634016	88661483
ISG20_chr15_88634016_88661483	1/0	c0002	546	97	17	20	45	5	9	copy fasta	ISG20	chr15	88634016	88661483
ISG20_chr15_88634016_88661483	0/0	c0003	546	4	4	0	0	0	0	copy fasta	ISG20	chr15	88634016	88661483
ISG20_chr15_88634016_88661483	0/0	c0004	546	3	1	0	0	1	1	copy fasta	ISG20	chr15	88634016	88661483
ISG20_chr15_88634016_88661483	0/0	c0005	546	2	0	0	2	0	0	copy fasta	ISG20	chr15	88634016	88661483
ISG20_chr15_88634016_88661483	0/0	c0006	546	1	0	0	1	0	0	copy fasta	ISG20	chr15	88634016	88661483
ISG20_chr15_88634016_88661483	0/0	c0007	546	1	0	0	1	0	0	copy fasta	ISG20	chr15	88634016	88661483
ISG20_chr15_88634016_88661483	0/0	c0008	546	1	0	0	0	0	1	copy fasta	ISG20	chr15	88634016	88661483
ISG20_chr15_88634016_88661483	0/0	c0009	546	1	1	0	0	0	0	copy fasta	ISG20	chr15	88634016	88661483
ISG20_chr15_88634016_88661483	0/0	c0010	546	1	0	0	1	0	0	copy fasta	ISG20	chr15	88634016	88661483
ISG20_chr15_88634016_88661483	0/0	c0011	546	1	1	0	0	0	0	copy fasta	ISG20	chr15	88634016	88661483
ISL1_chr5_51378448_51399730	1/1	c0001	1050	200	32	37	100	10	19	copy fasta	ISL1	chr5	51378448	51399730
ISL1_chr5_51378448_51399730	0/0	c0002	1050	138	55	27	44	3	9	copy fasta	ISL1	chr5	51378448	51399730
ISL1_chr5_51378448_51399730	0/0	c0003	1050	2	0	0	0	0	2	copy fasta	ISL1	chr5	51378448	51399730
ISL1_chr5_51378448_51399730	0/0	c0004	1050	1	0	0	0	1	0	copy fasta	ISL1	chr5	51378448	51399730
ISL1_chr5_51378448_51399730	0/0	c0005	1050	1	1	0	0	0	0	copy fasta	ISL1	chr5	51378448	51399730
ISL2_chr15_76331773_76347475	0/1	c0001	1080	293	25	66	155	9	37	copy fasta	ISL2	chr15	76331773	76347475
ISL2_chr15_76331773_76347475	1/0	c0002	1080	99	67	10	18	1	2	copy fasta	ISL2	chr15	76331773	76347475
ISL2_chr15_76331773_76347475	0/0	c0003	1080	18	7	3	4	2	2	copy fasta	ISL2	chr15	76331773	76347475
ISL2_chr15_76331773_76347475	0/0	c0004	1080	2	0	0	2	0	0	copy fasta	ISL2	chr15	76331773	76347475
ISL2_chr15_76331773_76347475	0/0	c0005	1080	1	0	1	0	0	0	copy fasta	ISL2	chr15	76331773	76347475
ISL2_chr15_76331773_76347475	0/0	c0006	1080	1	0	0	1	0	0	copy fasta	ISL2	chr15	76331773	76347475
ISL2_chr15_76331773_76347475	0/0	c0007	1080	1	0	0	0	0	1	copy fasta	ISL2	chr15	76331773	76347475
ISL2_chr15_76331773_76347475	0/0	c0008	1080	1	1	0	0	0	0	copy fasta	ISL2	chr15	76331773	76347475
ISLR2_chr15_74125586_74141802	1/1	c0001	2238	341	56	55	173	10	45	copy fasta	ISLR2	chr15	74125586	74141802
ISLR2_chr15_74125586_74141802	0/0	c0002	2238	21	15	6	0	0	0	copy fasta	ISLR2	chr15	74125586	74141802
ISLR2_chr15_74125586_74141802	0/0	c0003	2238	19	8	2	9	0	0	copy fasta	ISLR2	chr15	74125586	74141802
ISLR2_chr15_74125586_74141802	0/0	c0004	2238	12	12	0	0	0	0	copy fasta	ISLR2	chr15	74125586	74141802
ISLR2_chr15_74125586_74141802	0/0	c0005	2238	1	0	1	0	0	0	copy fasta	ISLR2	chr15	74125586	74141802
ISLR2_chr15_74125586_74141802	0/0	c0006	2238	1	1	0	0	0	0	copy fasta	ISLR2	chr15	74125586	74141802
ISLR2_chr15_74125586_74141802	0/0	c0007	2238	1	1	0	0	0	0	copy fasta	ISLR2	chr15	74125586	74141802
ISLR2_chr15_74125586_74141802	0/0	c0008	2238	1	1	0	0	0	0	copy fasta	ISLR2	chr15	74125586	74141802
ISLR2_chr15_74125586_74141802	0/0	c0009	2238	1	0	0	0	0	1	copy fasta	ISLR2	chr15	74125586	74141802
ISLR_chr15_74168710_74181871	0/1	c0001	1287	239	45	45	108	11	29	copy fasta	ISLR	chr15	74168710	74181871
ISLR_chr15_74168710_74181871	1/0	c0002	1287	152	34	16	84	4	13	copy fasta	ISLR	chr15	74168710	74181871
ISLR_chr15_74168710_74181871	0/0	c0003	1287	15	2	8	0	3	2	copy fasta	ISLR	chr15	74168710	74181871
ISLR_chr15_74168710_74181871	0/0	c0004	1287	7	5	2	0	0	0	copy fasta	ISLR	chr15	74168710	74181871
ISLR_chr15_74168710_74181871	0/0	c0005	1287	6	5	1	0	0	0	copy fasta	ISLR	chr15	74168710	74181871
ISLR_chr15_74168710_74181871	0/0	c0006	1287	5	0	0	5	0	0	copy fasta	ISLR	chr15	74168710	74181871