JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ISLR_chr15_74168710_74181871	0/0	c0007	1287	3	1	2	0	0	0	copy fasta	ISLR	chr15	74168710	74181871
ISLR_chr15_74168710_74181871	0/0	c0008	1287	2	0	2	0	0	0	copy fasta	ISLR	chr15	74168710	74181871
ISLR_chr15_74168710_74181871	0/0	c0009	1287	2	0	0	2	0	0	copy fasta	ISLR	chr15	74168710	74181871
ISLR_chr15_74168710_74181871	0/0	c0010	1287	2	0	2	0	0	0	copy fasta	ISLR	chr15	74168710	74181871
ISLR_chr15_74168710_74181871	0/0	c0011	1287	1	0	0	1	0	0	copy fasta	ISLR	chr15	74168710	74181871
ISM1_chr20_13216274_13305651	1/1	c0001	1395	313	83	58	127	13	30	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	c0002	1395	51	3	4	41	0	3	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	c0003	1395	13	1	7	5	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	c0004	1395	7	0	0	7	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	c0005	1395	3	0	3	0	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	c0006	1395	2	0	0	2	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	c0007	1395	1	0	0	0	1	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	c0008	1395	1	0	0	0	0	1	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	c0009	1395	1	0	0	1	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	c0010	1395	1	1	0	0	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	c0011	1395	1	1	0	0	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	c0012	1395	1	0	0	1	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM1_chr20_13216274_13305651	0/0	c0013	1395	1	1	0	0	0	0	copy fasta	ISM1	chr20	13216274	13305651
ISM2_chr14_77469394_77503816	0/1	c0001	1716	128	14	36	51	6	20	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	1/0	c0002	1716	96	58	15	4	5	13	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	c0003	1716	14	1	6	3	1	3	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	c0004	1716	8	8	0	0	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	c0005	1716	3	0	0	3	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	c0006	1716	3	0	3	0	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	c0007	1716	3	2	0	1	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	c0008	1716	3	0	1	0	0	2	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	c0009	1716	2	1	1	0	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	c0010	1716	2	0	0	1	1	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	c0011	1716	2	0	0	0	0	2	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	c0012	1716	2	0	0	2	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	c0013	1716	2	2	0	0	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	c0014	1716	2	2	0	0	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	c0015	1716	2	0	2	0	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	c0016	1716	1	0	1	0	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	c0017	1716	1	0	0	0	1	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	c0018	1716	1	0	0	1	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	c0019	1716	1	1	0	0	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	c0020	1716	1	1	0	0	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	c0021	1716	1	1	0	0	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	c0022	1716	1	0	1	0	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISM2_chr14_77469394_77503816	0/0	c0023	1716	1	1	0	0	0	0	copy fasta	ISM2	chr14	77469394	77503816
ISOC1_chr5_129089749_129119028	0/1	c0001	897	292	71	52	128	14	26	copy fasta	ISOC1	chr5	129089749	129119028
ISOC1_chr5_129089749_129119028	1/0	c0002	897	68	5	20	27	4	11	copy fasta	ISOC1	chr5	129089749	129119028
ISOC1_chr5_129089749_129119028	0/0	c0003	897	35	20	2	12	0	1	copy fasta	ISOC1	chr5	129089749	129119028
ISOC1_chr5_129089749_129119028	0/0	c0004	897	18	0	0	18	0	0	copy fasta	ISOC1	chr5	129089749	129119028
ISOC1_chr5_129089749_129119028	0/0	c0005	897	1	0	0	1	0	0	copy fasta	ISOC1	chr5	129089749	129119028
ISOC1_chr5_129089749_129119028	0/0	c0006	897	1	0	0	1	0	0	copy fasta	ISOC1	chr5	129089749	129119028
ISOC1_chr5_129089749_129119028	0/0	c0007	897	1	1	0	0	0	0	copy fasta	ISOC1	chr5	129089749	129119028
ISOC1_chr5_129089749_129119028	0/0	c0008	897	1	1	0	0	0	0	copy fasta	ISOC1	chr5	129089749	129119028
ISOC1_chr5_129089749_129119028	0/0	c0009	897	1	0	0	1	0	0	copy fasta	ISOC1	chr5	129089749	129119028