JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ALMS1_chr2_73380836_73614916	0/0	c0047	12498	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0048	12498	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0049	12498	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0050	12498	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0051	12498	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0052	12498	1	0	0	0	0	1	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0053	12498	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0054	12498	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0055	12498	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0056	12498	1	0	1	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0057	12501	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0058	12504	1	0	1	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0059	12507	1	0	1	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	1/0	c0060	12507	1	0	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0061	12504	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0062	12504	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0063	12504	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0064	12504	1	0	1	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0065	12504	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0066	12510	1	0	1	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0067	12510	1	0	0	1	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0068	12510	1	0	0	0	0	1	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0069	12510	1	0	0	1	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0070	12510	1	0	0	0	0	1	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0071	12510	1	0	1	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0072	12510	1	0	0	1	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0073	12510	1	0	1	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0074	12513	1	0	0	0	0	1	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0075	12510	1	1	0	0	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALMS1_chr2_73380836_73614916	0/0	c0076	12519	1	0	0	1	0	0	copy fasta	ALMS1	chr2	73380836	73614916
ALOX12B_chr17_8067636_8092716	1/1	c0001	2106	422	74	83	205	17	41	copy fasta	ALOX12B	chr17	8067636	8092716
ALOX12B_chr17_8067636_8092716	0/0	c0002	2106	18	15	3	0	0	0	copy fasta	ALOX12B	chr17	8067636	8092716
ALOX12B_chr17_8067636_8092716	0/0	c0003	2106	5	0	0	5	0	0	copy fasta	ALOX12B	chr17	8067636	8092716
ALOX12B_chr17_8067636_8092716	0/0	c0004	2106	4	0	0	4	0	0	copy fasta	ALOX12B	chr17	8067636	8092716
ALOX12B_chr17_8067636_8092716	0/0	c0005	2106	3	1	0	0	1	1	copy fasta	ALOX12B	chr17	8067636	8092716
ALOX12B_chr17_8067636_8092716	0/0	c0006	2106	2	2	0	0	0	0	copy fasta	ALOX12B	chr17	8067636	8092716
ALOX12B_chr17_8067636_8092716	0/0	c0007	2106	2	1	1	0	0	0	copy fasta	ALOX12B	chr17	8067636	8092716
ALOX12B_chr17_8067636_8092716	0/0	c0008	2106	1	1	0	0	0	0	copy fasta	ALOX12B	chr17	8067636	8092716
ALOX12B_chr17_8067636_8092716	0/0	c0009	2106	1	0	1	0	0	0	copy fasta	ALOX12B	chr17	8067636	8092716
ALOX12B_chr17_8067636_8092716	0/0	c0010	2106	1	0	0	0	0	1	copy fasta	ALOX12B	chr17	8067636	8092716
ALOX12B_chr17_8067636_8092716	0/0	c0011	2106	1	0	0	1	0	0	copy fasta	ALOX12B	chr17	8067636	8092716
ALOX12B_chr17_8067636_8092716	0/0	c0012	2106	1	0	0	1	0	0	copy fasta	ALOX12B	chr17	8067636	8092716
ALOX12B_chr17_8067636_8092716	0/0	c0013	2106	1	0	0	0	0	1	copy fasta	ALOX12B	chr17	8067636	8092716
ALOX12_chr17_6991049_7015754	0/0	c0001	1992	175	45	27	73	7	23	copy fasta	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	0/0	c0002	1992	74	6	14	47	2	5	copy fasta	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	0/1	c0003	1992	52	1	25	21	1	3	copy fasta	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	0/0	c0004	1992	49	1	4	29	3	12	copy fasta	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	1/0	c0005	1992	19	12	3	2	0	1	copy fasta	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	0/0	c0006	1992	13	13	0	0	0	0	copy fasta	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	0/0	c0007	1992	5	1	0	4	0	0	copy fasta	ALOX12	chr17	6991049	7015754