JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ISOC2_chr19_55447985_55466642	1/1	c0001	618	291	63	54	115	17	40	copy fasta	ISOC2	chr19	55447985	55466642
ISOC2_chr19_55447985_55466642	0/0	c0002	618	56	12	18	24	0	2	copy fasta	ISOC2	chr19	55447985	55466642
ISOC2_chr19_55447985_55466642	0/0	c0003	618	22	17	4	0	1	0	copy fasta	ISOC2	chr19	55447985	55466642
ISOC2_chr19_55447985_55466642	0/0	c0004	618	3	0	0	0	0	3	copy fasta	ISOC2	chr19	55447985	55466642
ISOC2_chr19_55447985_55466642	0/0	c0005	618	2	0	0	2	0	0	copy fasta	ISOC2	chr19	55447985	55466642
ISOC2_chr19_55447985_55466642	0/0	c0006	618	1	0	0	1	0	0	copy fasta	ISOC2	chr19	55447985	55466642
ISOC2_chr19_55447985_55466642	0/0	c0007	618	1	0	0	1	0	0	copy fasta	ISOC2	chr19	55447985	55466642
ISOC2_chr19_55447985_55466642	0/0	c0008	618	1	0	0	0	0	1	copy fasta	ISOC2	chr19	55447985	55466642
ISOC2_chr19_55447985_55466642	0/0	c0009	618	1	1	0	0	0	0	copy fasta	ISOC2	chr19	55447985	55466642
ISOC2_chr19_55447985_55466642	0/0	c0010	618	1	0	0	1	0	0	copy fasta	ISOC2	chr19	55447985	55466642
ISOC2_chr19_55447985_55466642	0/0	c0011	618	1	1	0	0	0	0	copy fasta	ISOC2	chr19	55447985	55466642
IST1_chr16_71890531_71936199	1/0	c0001	1101	215	57	51	77	11	18	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	c0002	1095	80	4	6	52	2	16	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/1	c0003	1095	34	14	10	3	1	5	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	c0004	1107	12	12	0	0	0	0	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	c0005	1095	5	0	3	0	2	0	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	c0006	1095	2	0	0	0	0	2	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	c0007	1101	1	1	0	0	0	0	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	c0008	1101	1	0	0	0	0	1	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	c0009	1101	1	0	1	0	0	0	copy fasta	IST1	chr16	71890531	71936199
IST1_chr16_71890531_71936199	0/0	c0010	1101	1	0	1	0	0	0	copy fasta	IST1	chr16	71890531	71936199
ISX_chr22_35061158_35092387	0/0	c0001	738	255	46	40	137	5	27	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	1/1	c0002	738	75	6	19	42	5	1	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	c0003	738	30	15	1	13	0	1	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	c0004	738	9	2	1	0	1	5	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	c0005	738	9	1	4	0	1	3	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	c0006	738	8	7	1	0	0	0	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	c0007	738	7	1	2	1	0	3	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	c0008	738	5	1	2	0	2	0	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	c0009	738	3	2	1	0	0	0	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	c0010	738	2	0	0	2	0	0	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	c0011	738	1	0	1	0	0	0	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	c0012	738	1	1	0	0	0	0	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	c0013	738	1	1	0	0	0	0	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	c0014	738	1	1	0	0	0	0	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	c0015	738	1	1	0	0	0	0	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	c0016	738	1	0	0	1	0	0	copy fasta	ISX	chr22	35061158	35092387
ISX_chr22_35061158_35092387	0/0	c0017	738	1	1	0	0	0	0	copy fasta	ISX	chr22	35061158	35092387
ISY1_chr3_129122415_129166063	1/1	c0001	858	366	84	70	148	14	48	copy fasta	ISY1	chr3	129122415	129166063
ISYNA1_chr19_18429388_18443133	1/1	c0001	1677	126	15	34	54	6	15	copy fasta	ISYNA1	chr19	18429388	18443133
ISYNA1_chr19_18429388_18443133	0/0	c0002	1677	89	58	12	9	2	8	copy fasta	ISYNA1	chr19	18429388	18443133
ISYNA1_chr19_18429388_18443133	0/0	c0003	1677	76	20	22	20	6	8	copy fasta	ISYNA1	chr19	18429388	18443133
ISYNA1_chr19_18429388_18443133	0/0	c0004	1677	3	3	0	0	0	0	copy fasta	ISYNA1	chr19	18429388	18443133
ISYNA1_chr19_18429388_18443133	0/0	c0005	1677	3	0	0	3	0	0	copy fasta	ISYNA1	chr19	18429388	18443133
ISYNA1_chr19_18429388_18443133	0/0	c0006	1677	3	0	3	0	0	0	copy fasta	ISYNA1	chr19	18429388	18443133
ISYNA1_chr19_18429388_18443133	0/0	c0007	1677	3	3	0	0	0	0	copy fasta	ISYNA1	chr19	18429388	18443133
ISYNA1_chr19_18429388_18443133	0/0	c0008	1677	2	0	1	0	0	1	copy fasta	ISYNA1	chr19	18429388	18443133
ISYNA1_chr19_18429388_18443133	0/0	c0009	1677	1	1	0	0	0	0	copy fasta	ISYNA1	chr19	18429388	18443133
ISYNA1_chr19_18429388_18443133	0/0	c0010	1677	1	0	0	1	0	0	copy fasta	ISYNA1	chr19	18429388	18443133
ISYNA1_chr19_18429388_18443133	0/0	c0011	1687	1	0	0	1	0	0	copy fasta	ISYNA1	chr19	18429388	18443133