JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ITCH_chr20_34358273_34516773	1/1	c0001	2589	278	70	40	126	10	30	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	c0002	2589	10	0	0	10	0	0	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	c0003	2589	1	0	0	1	0	0	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	c0004	2589	1	1	0	0	0	0	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	c0005	2589	1	1	0	0	0	0	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	c0006	2589	1	1	0	0	0	0	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	c0007	2589	1	0	0	1	0	0	copy fasta	ITCH	chr20	34358273	34516773
ITCH_chr20_34358273_34516773	0/0	c0008	2589	1	1	0	0	0	0	copy fasta	ITCH	chr20	34358273	34516773
ITFG1_chr16_47149391_47466063	1/1	c0001	1839	81	48	13	4	4	10	copy fasta	ITFG1	chr16	47149391	47466063
ITFG1_chr16_47149391_47466063	0/0	c0002	1839	26	20	6	0	0	0	copy fasta	ITFG1	chr16	47149391	47466063
ITFG1_chr16_47149391_47466063	0/0	c0003	1839	1	0	1	0	0	0	copy fasta	ITFG1	chr16	47149391	47466063
ITFG1_chr16_47149391_47466063	0/0	c0004	1839	1	1	0	0	0	0	copy fasta	ITFG1	chr16	47149391	47466063
ITFG1_chr16_47149391_47466063	0/0	c0005	1839	1	1	0	0	0	0	copy fasta	ITFG1	chr16	47149391	47466063
ITFG2_chr12_2807668_2830076	1/1	c0001	1344	390	86	64	184	12	42	copy fasta	ITFG2	chr12	2807668	2830076
ITFG2_chr12_2807668_2830076	0/0	c0002	1344	8	8	0	0	0	0	copy fasta	ITFG2	chr12	2807668	2830076
ITFG2_chr12_2807668_2830076	0/0	c0003	1344	1	0	0	1	0	0	copy fasta	ITFG2	chr12	2807668	2830076
ITFG2_chr12_2807668_2830076	0/0	c0004	1344	1	0	0	1	0	0	copy fasta	ITFG2	chr12	2807668	2830076
ITFG2_chr12_2807668_2830076	0/0	c0005	1344	1	0	0	1	0	0	copy fasta	ITFG2	chr12	2807668	2830076
ITFG2_chr12_2807668_2830076	0/0	c0006	1344	1	0	0	1	0	0	copy fasta	ITFG2	chr12	2807668	2830076
ITGA10_chr1_145886208_145915050	1/0	c0001	3504	238	46	38	126	2	25	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	c0002	3504	57	2	26	15	8	6	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/1	c0003	3504	45	10	11	16	0	7	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	c0004	3504	5	0	0	5	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	c0005	3504	5	5	0	0	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	c0006	3504	5	5	0	0	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	c0007	3504	4	0	0	3	0	1	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	c0008	3504	4	4	0	0	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	c0009	3504	3	3	0	0	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	c0010	3504	2	2	0	0	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	c0011	3504	2	2	0	0	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	c0012	3504	2	0	0	2	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	c0013	3504	2	2	0	0	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	c0014	3504	2	2	0	0	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	c0015	3504	2	2	0	0	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	c0016	3504	1	1	0	0	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	c0017	3504	1	0	0	1	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	c0018	3504	1	0	0	1	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	c0019	3504	1	0	0	1	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	c0020	3504	1	0	0	1	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	c0021	3504	1	0	1	0	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	c0022	3504	1	1	0	0	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	c0023	3504	1	0	0	0	0	1	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	c0024	3504	1	0	0	1	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	c0025	3504	1	0	1	0	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	c0026	3504	1	0	1	0	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA10_chr1_145886208_145915050	0/0	c0027	3504	1	1	0	0	0	0	copy fasta	ITGA10	chr1	145886208	145915050
ITGA11_chr15_68291532_68437163	0/0	c0001	3567	29	1	7	13	2	6	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0002	3567	20	0	9	4	0	7	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0003	3567	18	0	1	14	0	3	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0004	3567	14	0	2	11	0	1	copy fasta	ITGA11	chr15	68291532	68437163