JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ITGA11_chr15_68291532_68437163	0/0	c0055	3567	1	0	0	1	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0056	3567	1	0	0	1	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0057	3567	1	0	1	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0058	3567	1	0	0	0	1	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0059	3567	1	0	0	1	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0060	3567	1	0	0	0	0	1	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0061	3567	1	0	1	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0062	3567	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0063	3567	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0064	3567	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0065	3567	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0066	3567	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0067	3567	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0068	3567	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0069	3567	1	0	0	1	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0070	3567	1	0	0	1	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0071	3567	1	0	0	0	0	1	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0072	3567	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0073	3567	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0074	3567	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0075	3567	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0076	3567	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0077	3567	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0078	3567	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0079	3567	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0080	3567	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0081	3567	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0082	3567	1	1	0	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0083	3567	1	0	1	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA11_chr15_68291532_68437163	0/0	c0084	3567	1	0	1	0	0	0	copy fasta	ITGA11	chr15	68291532	68437163
ITGA1_chr5_52782916_52964209	0/1	c0001	3540	98	39	11	25	8	14	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	c0002	3540	70	19	17	22	2	10	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	1/0	c0003	3540	31	4	4	17	1	4	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	c0004	3540	28	5	2	13	1	7	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	c0005	3540	21	0	4	14	1	2	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	c0006	3540	19	13	0	5	0	1	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	c0007	3540	8	1	0	7	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	c0008	3540	8	0	5	3	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	c0009	3540	6	1	1	4	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	c0010	3540	6	1	2	3	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	c0011	3540	5	0	0	5	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	c0012	3540	4	0	0	4	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	c0013	3540	2	2	0	0	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	c0014	3540	2	0	0	1	1	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	c0015	3540	2	0	0	2	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	c0016	3540	1	1	0	0	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	c0017	3540	1	1	0	0	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	c0018	3540	1	0	0	1	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	c0019	3540	1	0	0	0	0	1	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	c0020	3540	1	0	1	0	0	0	copy fasta	ITGA1	chr5	52782916	52964209