JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ITGA1_chr5_52782916_52964209	0/0	c0021	3540	1	0	1	0	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	c0022	3540	1	0	0	1	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	c0023	3540	1	0	0	1	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	c0024	3540	1	0	0	1	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	c0025	3540	1	0	0	0	0	1	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	c0026	3540	1	1	0	0	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA1_chr5_52782916_52964209	0/0	c0027	3540	1	0	0	1	0	0	copy fasta	ITGA1	chr5	52782916	52964209
ITGA2B_chr17_44367181_44394649	1/0	c0001	3120	194	43	41	82	6	21	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/1	c0002	3120	139	40	21	55	6	16	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/0	c0003	3120	6	1	0	5	0	0	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/0	c0004	3120	3	0	0	0	0	3	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/0	c0005	3120	1	0	0	1	0	0	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/0	c0006	3120	1	0	0	0	0	1	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/0	c0007	3120	1	0	0	1	0	0	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/0	c0008	3120	1	0	0	0	0	1	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/0	c0009	3120	1	0	1	0	0	0	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/0	c0010	3120	1	1	0	0	0	0	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/0	c0011	3120	1	0	1	0	0	0	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/0	c0012	3120	1	1	0	0	0	0	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/0	c0013	3120	1	1	0	0	0	0	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/0	c0014	3120	1	0	1	0	0	0	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/0	c0015	3120	1	1	0	0	0	0	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2B_chr17_44367181_44394649	0/0	c0016	3120	1	0	1	0	0	0	copy fasta	ITGA2B	chr17	44367181	44394649
ITGA2_chr5_52984352_53099779	1/0	c0001	3546	173	25	36	85	7	19	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/1	c0002	3546	120	20	26	56	5	12	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	c0003	3546	29	10	6	9	3	1	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	c0004	3546	23	22	1	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	c0005	3546	10	0	0	10	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	c0006	3546	6	0	0	6	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	c0007	3546	5	5	0	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	c0008	3546	5	5	0	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	c0009	3546	3	0	0	3	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	c0010	3546	3	0	3	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	c0011	3546	3	1	1	0	1	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	c0012	3546	1	0	0	1	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	c0013	3546	1	0	0	1	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	c0014	3546	1	0	0	1	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	c0015	3546	1	0	0	0	0	1	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	c0016	3546	1	0	0	0	0	1	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	c0017	3546	1	1	0	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	c0018	3546	1	1	0	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	c0019	3546	1	1	0	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	c0020	3546	1	0	0	1	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	c0021	3546	1	1	0	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	c0022	3546	1	0	0	0	0	1	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	c0023	3546	1	0	0	1	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	c0024	3546	1	0	0	1	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	c0025	3546	1	0	0	1	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	c0026	3546	1	0	0	0	0	1	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	c0027	3546	1	0	0	1	0	0	copy fasta	ITGA2	chr5	52984352	53099779