JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ITGA2_chr5_52984352_53099779	0/0	c0028	3546	1	0	0	1	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA2_chr5_52984352_53099779	0/0	c0029	3546	1	0	1	0	0	0	copy fasta	ITGA2	chr5	52984352	53099779
ITGA3_chr17_50051110_50095481	1/0	c0001	3156	246	43	52	107	16	27	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	c0002	3156	83	1	11	50	1	20	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	c0003	3156	17	16	1	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	c0004	3156	12	8	4	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	c0005	3156	6	0	0	6	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	c0006	3156	5	0	0	5	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	c0007	3156	4	4	0	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	c0008	3156	4	4	0	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	c0009	3156	4	2	2	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	c0010	3156	3	3	0	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	c0011	3156	2	0	1	0	1	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	c0012	3156	1	0	0	1	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	c0013	3156	1	1	0	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	c0014	3156	1	1	0	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	c0015	3156	1	1	0	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	c0016	3156	1	1	0	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	c0017	3156	1	0	0	1	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	c0018	3156	1	1	0	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	c0019	3156	1	0	0	1	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	c0020	3156	1	0	1	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	c0021	3156	1	0	0	1	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	c0022	3156	1	1	0	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	c0023	3156	1	0	1	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	c0024	3156	1	1	0	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	c0025	3156	1	0	0	0	0	1	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/0	c0026	3156	1	0	1	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA3_chr17_50051110_50095481	0/1	c0027	3156	1	0	0	0	0	0	copy fasta	ITGA3	chr17	50051110	50095481
ITGA4_chr2_181452386_181543940	0/1	c0001	3099	194	44	31	96	5	17	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	c0002	3099	75	13	17	42	2	1	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	c0003	3099	69	10	14	38	3	4	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	c0004	3099	8	8	0	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	c0005	3099	8	8	0	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	1/0	c0006	3099	2	1	0	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	c0007	3099	2	0	0	0	1	1	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	c0008	3099	1	0	0	1	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	c0009	3099	1	0	0	0	0	1	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	c0010	3099	1	0	1	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	c0011	3099	1	0	0	0	1	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	c0012	3099	1	1	0	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	c0013	3099	1	0	0	1	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	c0014	3099	1	0	0	1	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	c0015	3099	1	1	0	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	c0016	3099	1	0	1	0	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA4_chr2_181452386_181543940	0/0	c0017	3099	1	0	0	1	0	0	copy fasta	ITGA4	chr2	181452386	181543940
ITGA5_chr12_54390261_54424266	1/1	c0001	3150	284	62	69	108	11	32	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	c0002	3150	12	5	0	0	0	7	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	c0003	3150	8	8	0	0	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	c0004	3150	3	3	0	0	0	0	copy fasta	ITGA5	chr12	54390261	54424266