JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ITGA5_chr12_54390261_54424266	0/0	c0005	3150	3	3	0	0	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	c0006	3150	2	2	0	0	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	c0007	3150	2	2	0	0	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	c0008	3150	1	0	1	0	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	c0009	3150	1	0	0	0	0	1	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	c0010	3150	1	0	0	1	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	c0011	3150	1	0	0	1	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	c0012	3150	1	0	0	0	0	1	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	c0013	3150	1	0	0	1	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	c0014	3150	1	1	0	0	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	c0015	3150	1	1	0	0	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	c0016	3150	1	1	0	0	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	c0017	3150	1	1	0	0	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	c0018	3150	1	0	0	0	1	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	c0019	3150	1	1	0	0	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	c0020	3150	1	1	0	0	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	c0021	3150	1	1	0	0	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	c0022	3150	1	0	0	1	0	0	copy fasta	ITGA5	chr12	54390261	54424266
ITGA5_chr12_54390261_54424266	0/0	c0023	3150	1	0	0	0	0	1	copy fasta	ITGA5	chr12	54390261	54424266
ITGA6_chr2_172422586_172511459	1/1	c0001	3393	103	31	32	18	6	14	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	c0002	3393	82	9	15	50	1	7	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	c0003	3393	47	0	5	39	0	3	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	c0004	3393	40	18	7	9	3	3	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	c0005	3393	40	11	8	10	4	7	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	c0006	3393	10	0	0	9	0	1	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	c0007	3393	9	9	0	0	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	c0008	3393	8	8	0	0	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	c0009	3393	7	1	2	0	0	4	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	c0010	3393	2	2	0	0	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	c0011	3393	1	0	0	1	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	c0012	3393	1	1	0	0	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	c0013	3393	1	0	1	0	0	0	copy fasta	ITGA6	chr2	172422586	172511459
ITGA6_chr2_172422586_172511459	0/0	c0014	3393	1	0	0	0	0	1	copy fasta	ITGA6	chr2	172422586	172511459
ITGA7_chr12_55679568_55712904	0/1	c0001	3414	174	23	37	89	6	18	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	1/0	c0002	3414	84	41	16	15	6	5	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0003	3414	12	11	1	0	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0004	3414	9	0	7	0	0	2	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0005	3414	8	0	3	0	2	3	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0006	3414	3	0	1	0	1	1	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0007	3414	3	3	0	0	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0008	3414	3	3	0	0	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0009	3414	2	2	0	0	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0010	3414	2	0	1	0	0	1	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0011	3414	2	0	1	0	1	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0012	3414	2	0	0	2	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0013	3414	2	2	0	0	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0014	3414	2	0	2	0	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0015	3414	2	0	0	2	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0016	3414	1	1	0	0	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0017	3414	1	0	0	1	0	0	copy fasta	ITGA7	chr12	55679568	55712904