JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ITGA7_chr12_55679568_55712904	0/0	c0018	3414	1	1	0	0	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0019	3414	1	1	0	0	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0020	3414	1	1	0	0	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0021	3414	1	0	1	0	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0022	3414	1	0	0	1	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0023	3414	1	1	0	0	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0024	3414	1	0	0	0	0	1	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0025	3414	1	0	0	0	0	1	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0026	3414	1	1	0	0	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0027	3414	1	1	0	0	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0028	3414	1	1	0	0	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0029	3414	1	1	0	0	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0030	3414	1	1	0	0	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0031	3414	1	0	0	0	0	1	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0032	3414	1	1	0	0	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0033	3414	1	0	0	0	0	1	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0034	3414	1	0	0	1	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA7_chr12_55679568_55712904	0/0	c0035	3414	1	0	0	1	0	0	copy fasta	ITGA7	chr12	55679568	55712904
ITGA8_chr10_15508954_15724922	0/1	c0001	3192	140	44	32	42	6	15	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	1/0	c0002	3192	17	4	2	10	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	c0003	3192	11	2	0	9	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	c0004	3192	6	5	1	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	c0005	3192	5	1	4	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	c0006	3192	4	4	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	c0007	3192	4	4	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	c0008	3192	3	3	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	c0009	3192	3	2	1	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	c0010	3192	3	3	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	c0011	3192	2	2	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	c0012	3192	2	2	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	c0013	3192	2	2	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	c0014	3192	2	2	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	c0015	3192	2	0	0	2	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	c0016	3192	2	0	0	0	0	2	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	c0017	3192	1	1	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	c0018	3192	1	0	0	1	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	c0019	3192	1	0	0	1	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	c0020	3192	1	0	0	1	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	c0021	3192	1	1	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	c0022	3192	1	1	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	c0023	3192	1	1	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	c0024	3192	1	1	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	c0025	3192	1	1	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	c0026	3192	1	1	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	c0027	3192	1	1	0	0	0	0	copy fasta	ITGA8	chr10	15508954	15724922
ITGA8_chr10_15508954_15724922	0/0	c0028	3192	1	0	0	0	0	1	copy fasta	ITGA8	chr10	15508954	15724922
ITGA9_chr3_37447141_37828507	0/1	c0001	3108	53	6	13	27	2	4	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	1/0	c0002	3108	47	25	7	7	1	6	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	c0003	3108	11	9	2	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	c0004	3108	7	7	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507