JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ITGA9_chr3_37447141_37828507	0/0	c0005	3108	7	1	3	3	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	c0006	3108	6	0	0	5	0	1	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	c0007	3108	4	3	0	0	0	1	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	c0008	3108	4	1	3	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	c0009	3108	3	2	1	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	c0010	3108	3	3	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	c0011	3108	2	1	1	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	c0012	3108	2	0	0	2	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	c0013	3108	2	2	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	c0014	3108	1	1	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	c0015	3108	1	1	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	c0016	3108	1	0	0	0	0	1	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	c0017	3108	1	1	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	c0018	3108	1	0	0	0	0	1	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	c0019	3108	1	1	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	c0020	3108	1	0	1	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	c0021	3108	1	1	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	c0022	3108	1	1	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	c0023	3108	1	0	1	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	c0024	3108	1	1	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	c0025	3108	1	1	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	c0026	3108	1	1	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	c0027	3108	1	1	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	c0028	3108	1	0	0	0	1	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	c0029	3108	1	1	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGA9_chr3_37447141_37828507	0/0	c0030	3108	1	1	0	0	0	0	copy fasta	ITGA9	chr3	37447141	37828507
ITGAD_chr16_31388335_31431505	0/1	c0001	3486	276	60	50	125	14	26	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	1/0	c0002	3486	43	7	3	26	1	5	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	0/0	c0003	3486	16	16	0	0	0	0	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	0/0	c0004	3486	13	0	1	10	0	2	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	0/0	c0005	3486	5	5	0	0	0	0	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	0/0	c0006	3486	4	0	0	4	0	0	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	0/0	c0007	3486	3	3	0	0	0	0	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	0/0	c0008	3486	2	0	0	2	0	0	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	0/0	c0009	3486	2	2	0	0	0	0	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	0/0	c0010	3486	2	0	0	2	0	0	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	0/0	c0011	3486	1	1	0	0	0	0	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	0/0	c0012	3486	1	1	0	0	0	0	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	0/0	c0013	3486	1	0	0	1	0	0	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	0/0	c0014	3486	1	0	0	1	0	0	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	0/0	c0015	3486	1	0	1	0	0	0	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	0/0	c0016	3486	1	1	0	0	0	0	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	0/0	c0017	3486	1	0	0	0	0	1	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	0/0	c0018	3486	1	0	1	0	0	0	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	0/0	c0019	3486	1	0	0	1	0	0	copy fasta	ITGAD	chr16	31388335	31431505
ITGAD_chr16_31388335_31431505	0/0	c0020	3486	1	0	0	0	1	0	copy fasta	ITGAD	chr16	31388335	31431505
ITGAE_chr17_3709628_3806188	0/1	c0001	3540	67	16	20	17	5	8	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0002	3540	43	0	4	23	0	16	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	1/0	c0003	3540	30	0	3	24	0	2	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0004	3540	29	18	8	0	2	1	copy fasta	ITGAE	chr17	3709628	3806188