JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ITGAE_chr17_3709628_3806188	0/0	c0005	3540	21	3	9	2	4	3	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0006	3540	11	2	0	9	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0007	3540	10	0	1	7	1	1	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0008	3540	9	1	5	3	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0009	3540	9	3	0	5	1	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0010	3540	4	0	2	1	0	1	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0011	3540	4	0	1	3	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0012	3540	4	3	0	0	0	1	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0013	3540	4	0	0	4	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0014	3540	3	3	0	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0015	3540	3	0	0	0	0	3	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0016	3540	3	1	0	2	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0017	3540	2	0	1	1	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0018	3540	2	0	0	2	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0019	3540	2	2	0	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0020	3540	2	0	0	1	0	1	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0021	3540	2	0	1	0	0	1	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0022	3540	2	2	0	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0023	3540	2	2	0	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0024	3540	2	2	0	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0025	3540	2	2	0	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0026	3540	2	0	0	2	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0027	3540	2	2	0	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0028	3540	1	1	0	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0029	3540	1	0	0	1	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0030	3540	1	0	1	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0031	3540	1	0	0	1	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0032	3540	1	0	0	1	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0033	3540	1	0	0	0	0	1	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0034	3540	1	0	0	1	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0035	3540	1	0	0	1	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0036	3540	1	0	1	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0037	3540	1	0	0	1	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0038	3540	1	0	1	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0039	3540	1	1	0	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0040	3540	1	1	0	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0041	3540	1	1	0	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0042	3540	1	0	0	1	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0043	3540	1	1	0	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0044	3540	1	0	0	1	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0045	3540	1	1	0	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0046	3540	1	0	0	0	0	1	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0047	3540	1	1	0	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0048	3540	1	0	0	1	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0049	3540	1	0	0	1	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0050	3540	1	0	0	0	1	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0051	3540	1	1	0	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0052	3540	1	1	0	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAE_chr17_3709628_3806188	0/0	c0053	3540	1	1	0	0	0	0	copy fasta	ITGAE	chr17	3709628	3806188
ITGAL_chr16_30467742_30528185	1/1	c0001	3513	185	29	51	82	11	10	copy fasta	ITGAL	chr16	30467742	30528185