JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ALOX12_chr17_6991049_7015754	0/0	c0008	1992	2	1	1	0	0	0	copy fasta	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	0/0	c0009	1992	2	2	0	0	0	0	copy fasta	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	0/0	c0010	1992	2	2	0	0	0	0	copy fasta	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	0/0	c0011	1992	1	1	0	0	0	0	copy fasta	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	0/0	c0012	1992	1	1	0	0	0	0	copy fasta	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	0/0	c0013	1992	1	0	0	1	0	0	copy fasta	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	0/0	c0014	1992	1	1	0	0	0	0	copy fasta	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	0/0	c0015	1992	1	0	0	0	1	0	copy fasta	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	0/0	c0016	1992	1	0	0	1	0	0	copy fasta	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	0/0	c0017	1992	1	0	0	1	0	0	copy fasta	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	0/0	c0018	1959	1	0	0	1	0	0	copy fasta	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	0/0	c0019	1992	1	1	0	0	0	0	copy fasta	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	0/0	c0020	1992	1	1	0	0	0	0	copy fasta	ALOX12	chr17	6991049	7015754
ALOX12_chr17_6991049_7015754	0/0	c0021	1992	1	1	0	0	0	0	copy fasta	ALOX12	chr17	6991049	7015754
ALOX15B_chr17_8034059_8054134	0/0	c0001	2031	106	6	32	53	7	8	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0002	2031	95	9	31	39	7	9	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	1/0	c0003	2031	50	1	12	28	1	7	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0004	2031	36	7	1	18	0	10	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0005	2031	34	0	1	31	2	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0006	2031	17	6	0	11	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0007	2031	14	2	0	11	0	1	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0008	2031	13	8	1	1	0	3	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0009	2031	12	10	2	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/1	c0010	2031	11	5	0	0	0	5	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0011	2031	8	8	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0012	2031	7	0	1	6	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0013	2031	6	6	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0014	2031	4	3	1	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0015	2031	3	3	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0016	2031	3	0	3	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0017	2031	3	3	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0018	2031	3	0	0	3	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0019	2031	3	0	0	3	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0020	2031	3	0	0	0	0	3	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0021	2031	3	0	0	2	0	1	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0022	2031	2	0	0	2	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0023	2031	2	0	0	2	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0024	2031	2	0	0	2	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0025	2031	2	2	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0026	2031	1	1	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0027	2031	1	1	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0028	2031	1	1	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0029	2031	1	1	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0030	2031	1	1	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0031	2031	1	1	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0032	2031	1	0	0	1	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0033	2031	1	0	1	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0034	2031	1	0	0	1	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0035	2031	1	0	1	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0036	2031	1	1	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134