JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ITGAL_chr16_30467742_30528185	0/0	c0002	3513	73	19	12	18	5	19	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	c0003	3513	10	10	0	0	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	c0004	3513	8	8	0	0	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	c0005	3513	8	7	1	0	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	c0006	3513	5	4	1	0	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	c0007	3513	4	0	3	1	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	c0008	3513	3	3	0	0	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	c0009	3513	3	0	0	0	0	3	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	c0010	3513	2	2	0	0	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	c0011	3513	1	0	0	0	0	1	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	c0012	3513	1	1	0	0	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	c0013	3513	1	0	0	1	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	c0014	3513	1	0	0	0	0	1	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	c0015	3513	1	0	0	1	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	c0016	3513	1	1	0	0	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	c0017	3513	1	1	0	0	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	c0018	3513	1	0	0	1	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	c0019	3513	1	0	0	1	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	c0020	3513	1	1	0	0	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	c0021	3513	1	0	1	0	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	c0022	3513	1	1	0	0	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	c0023	3513	1	1	0	0	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	c0024	3513	1	0	1	0	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	c0025	3513	1	0	0	1	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	c0026	3513	1	0	1	0	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAL_chr16_30467742_30528185	0/0	c0027	3513	1	0	1	0	0	0	copy fasta	ITGAL	chr16	30467742	30528185
ITGAM_chr16_31254975_31337877	1/1	c0001	3459	88	20	18	32	4	12	copy fasta	ITGAM	chr16	31254975	31337877
ITGAM_chr16_31254975_31337877	0/0	c0002	3459	57	3	17	32	2	3	copy fasta	ITGAM	chr16	31254975	31337877
ITGAM_chr16_31254975_31337877	0/0	c0003	3459	24	10	4	2	0	8	copy fasta	ITGAM	chr16	31254975	31337877
ITGAM_chr16_31254975_31337877	0/0	c0004	3459	23	15	4	0	2	2	copy fasta	ITGAM	chr16	31254975	31337877
ITGAM_chr16_31254975_31337877	0/0	c0005	3459	19	19	0	0	0	0	copy fasta	ITGAM	chr16	31254975	31337877
ITGAM_chr16_31254975_31337877	0/0	c0006	3459	14	5	7	0	2	0	copy fasta	ITGAM	chr16	31254975	31337877
ITGAM_chr16_31254975_31337877	0/0	c0007	3459	9	8	1	0	0	0	copy fasta	ITGAM	chr16	31254975	31337877
ITGAM_chr16_31254975_31337877	0/0	c0008	3459	2	2	0	0	0	0	copy fasta	ITGAM	chr16	31254975	31337877
ITGAM_chr16_31254975_31337877	0/0	c0009	3459	2	0	0	2	0	0	copy fasta	ITGAM	chr16	31254975	31337877
ITGAM_chr16_31254975_31337877	0/0	c0010	3459	1	1	0	0	0	0	copy fasta	ITGAM	chr16	31254975	31337877
ITGAM_chr16_31254975_31337877	0/0	c0011	3459	1	1	0	0	0	0	copy fasta	ITGAM	chr16	31254975	31337877
ITGAM_chr16_31254975_31337877	0/0	c0012	3459	1	1	0	0	0	0	copy fasta	ITGAM	chr16	31254975	31337877
ITGAM_chr16_31254975_31337877	0/0	c0013	3459	1	1	0	0	0	0	copy fasta	ITGAM	chr16	31254975	31337877
ITGAM_chr16_31254975_31337877	0/0	c0014	3459	1	0	1	0	0	0	copy fasta	ITGAM	chr16	31254975	31337877
ITGAM_chr16_31254975_31337877	0/0	c0015	3459	1	0	0	0	0	1	copy fasta	ITGAM	chr16	31254975	31337877
ITGAV_chr2_186585056_186685901	0/1	c0001	3147	264	63	60	88	14	38	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	c0002	3147	22	7	5	10	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	c0003	3147	7	7	0	0	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	1/0	c0004	3147	7	6	0	0	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	c0005	3147	3	3	0	0	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	c0006	3147	1	0	1	0	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	c0007	3147	1	0	0	1	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	c0008	3147	1	1	0	0	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAV_chr2_186585056_186685901	0/0	c0009	3147	1	1	0	0	0	0	copy fasta	ITGAV	chr2	186585056	186685901