JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ITGAV_chr2_186585056_186685901	0/0	c0010	3147	1	0	0	1	0	0	copy fasta	ITGAV	chr2	186585056	186685901
ITGAX_chr16_31350176_31387999	1/0	c0001	3492	159	51	26	44	3	34	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/1	c0002	3492	114	1	26	79	2	5	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0003	3492	10	9	1	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0004	3492	7	1	2	0	1	3	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0005	3492	7	0	7	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0006	3492	5	5	0	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0007	3492	5	5	0	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0008	3492	5	5	0	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0009	3492	4	4	0	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0010	3492	3	0	2	0	1	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0011	3492	3	3	0	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0012	3492	2	1	1	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0013	3492	2	2	0	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0014	3492	1	0	0	0	1	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0015	3492	1	0	1	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0016	3492	1	0	0	0	1	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0017	3492	1	0	0	1	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0018	3492	1	1	0	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0019	3492	1	0	0	1	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0020	3492	1	1	0	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0021	3492	1	1	0	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0022	3492	1	0	0	0	1	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0023	3492	1	1	0	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0024	3492	1	1	0	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0025	3492	1	0	0	1	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0026	3492	1	1	0	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0027	3492	1	0	0	1	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0028	3492	1	0	0	1	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0029	3492	1	1	0	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0030	3492	1	0	0	1	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0031	3492	1	1	0	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0032	3492	1	0	0	1	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0033	3492	1	0	0	0	1	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0034	3492	1	0	0	0	1	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0035	3492	1	0	0	1	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0036	3492	1	0	0	1	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGAX_chr16_31350176_31387999	0/0	c0037	3492	1	1	0	0	0	0	copy fasta	ITGAX	chr16	31350176	31387999
ITGB1BP1_chr2_9398475_9428528	1/1	c0001	603	276	80	76	72	14	32	copy fasta	ITGB1BP1	chr2	9398475	9428528
ITGB1BP2_chrX_71296750_71310371	1/1	c0001	1044	282	71	57	111	11	30	copy fasta	ITGB1BP2	chrX	71296750	71310371
ITGB1BP2_chrX_71296750_71310371	0/0	c0002	1044	3	0	0	3	0	0	copy fasta	ITGB1BP2	chrX	71296750	71310371
ITGB1BP2_chrX_71296750_71310371	0/0	c0003	1044	2	0	0	0	0	2	copy fasta	ITGB1BP2	chrX	71296750	71310371
ITGB1BP2_chrX_71296750_71310371	0/0	c0004	1043	1	0	0	1	0	0	copy fasta	ITGB1BP2	chrX	71296750	71310371
ITGB1BP2_chrX_71296750_71310371	0/0	c0005	1045	1	0	0	1	0	0	copy fasta	ITGB1BP2	chrX	71296750	71310371
ITGB1BP2_chrX_71296750_71310371	0/0	c0006	1045	1	0	0	1	0	0	copy fasta	ITGB1BP2	chrX	71296750	71310371
ITGB1BP2_chrX_71296750_71310371	0/0	c0007	1044	1	1	0	0	0	0	copy fasta	ITGB1BP2	chrX	71296750	71310371
ITGB1_chr10_32895318_32963230	0/1	c0001	2397	181	53	39	56	11	21	copy fasta	ITGB1	chr10	32895318	32963230
ITGB1_chr10_32895318_32963230	0/0	c0002	2397	93	18	6	64	1	4	copy fasta	ITGB1	chr10	32895318	32963230
ITGB1_chr10_32895318_32963230	0/0	c0003	2397	67	2	13	40	3	9	copy fasta	ITGB1	chr10	32895318	32963230
ITGB1_chr10_32895318_32963230	0/0	c0004	2397	55	0	7	37	0	11	copy fasta	ITGB1	chr10	32895318	32963230