JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ITGB1_chr10_32895318_32963230	1/0	c0005	2397	6	5	0	0	0	0	copy fasta	ITGB1	chr10	32895318	32963230
ITGB1_chr10_32895318_32963230	0/0	c0006	2397	5	5	0	0	0	0	copy fasta	ITGB1	chr10	32895318	32963230
ITGB1_chr10_32895318_32963230	0/0	c0007	2397	5	5	0	0	0	0	copy fasta	ITGB1	chr10	32895318	32963230
ITGB1_chr10_32895318_32963230	0/0	c0008	2397	4	0	0	4	0	0	copy fasta	ITGB1	chr10	32895318	32963230
ITGB1_chr10_32895318_32963230	0/0	c0009	2397	3	1	1	0	1	0	copy fasta	ITGB1	chr10	32895318	32963230
ITGB1_chr10_32895318_32963230	0/0	c0010	2397	1	0	0	1	0	0	copy fasta	ITGB1	chr10	32895318	32963230
ITGB1_chr10_32895318_32963230	0/0	c0011	2397	1	0	0	1	0	0	copy fasta	ITGB1	chr10	32895318	32963230
ITGB1_chr10_32895318_32963230	0/0	c0012	2397	1	0	0	0	0	1	copy fasta	ITGB1	chr10	32895318	32963230
ITGB1_chr10_32895318_32963230	0/0	c0013	2397	1	0	0	1	0	0	copy fasta	ITGB1	chr10	32895318	32963230
ITGB1_chr10_32895318_32963230	0/0	c0014	2397	1	1	0	0	0	0	copy fasta	ITGB1	chr10	32895318	32963230
ITGB2_chr21_44880953_44925899	0/0	c0001	2310	176	40	26	93	7	10	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	1/0	c0002	2310	52	2	16	27	4	2	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/1	c0003	2310	38	4	11	17	3	2	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0004	2310	29	0	7	19	0	3	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0005	2310	25	5	6	1	1	12	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0006	2310	21	8	5	3	1	4	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0007	2310	19	8	3	4	1	3	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0008	2310	8	0	0	6	0	2	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0009	2310	8	4	1	2	1	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0010	2310	8	0	0	6	0	2	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0011	2310	7	0	7	0	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0012	2310	7	7	0	0	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0013	2310	5	0	0	5	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0014	2310	3	2	1	0	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0015	2310	3	0	0	1	0	2	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0016	2310	2	0	0	2	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0017	2310	2	2	0	0	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0018	2310	2	2	0	0	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0019	2310	2	0	0	2	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0020	2310	2	1	0	0	0	1	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0021	2310	1	0	0	1	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0022	2310	1	0	0	0	0	1	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0023	2310	1	0	0	1	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0024	2310	1	1	0	0	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0025	2310	1	1	0	0	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0026	2310	1	1	0	0	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0027	2310	1	0	0	0	0	1	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0028	2310	1	0	0	1	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0029	2310	1	1	0	0	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0030	2310	1	0	0	1	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0031	2310	1	0	0	1	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0032	2310	1	1	0	0	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0033	2310	1	1	0	0	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0034	2310	1	0	0	0	0	1	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0035	2310	1	1	0	0	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0036	2310	1	1	0	0	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0037	2310	1	1	0	0	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0038	2310	1	1	0	0	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0039	2310	1	0	1	0	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0040	2310	1	0	0	0	0	1	copy fasta	ITGB2	chr21	44880953	44925899