JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ITGB2_chr21_44880953_44925899	0/0	c0041	2310	1	0	0	0	0	1	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0042	2310	1	0	0	1	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0043	2310	1	1	0	0	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0044	2310	1	1	0	0	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB2_chr21_44880953_44925899	0/0	c0045	2310	1	1	0	0	0	0	copy fasta	ITGB2	chr21	44880953	44925899
ITGB3BP_chr1_63435770_63528225	1/1	c0001	534	361	84	64	171	8	32	copy fasta	ITGB3BP	chr1	63435770	63528225
ITGB3BP_chr1_63435770_63528225	0/0	c0002	534	6	5	1	0	0	0	copy fasta	ITGB3BP	chr1	63435770	63528225
ITGB3BP_chr1_63435770_63528225	0/0	c0003	534	3	0	0	3	0	0	copy fasta	ITGB3BP	chr1	63435770	63528225
ITGB3BP_chr1_63435770_63528225	0/0	c0004	534	2	0	2	0	0	0	copy fasta	ITGB3BP	chr1	63435770	63528225
ITGB3BP_chr1_63435770_63528225	0/0	c0005	534	1	0	1	0	0	0	copy fasta	ITGB3BP	chr1	63435770	63528225
ITGB3BP_chr1_63435770_63528225	0/0	c0006	534	1	1	0	0	0	0	copy fasta	ITGB3BP	chr1	63435770	63528225
ITGB3_chr17_47248827_47318743	1/1	c0001	2367	170	39	33	72	5	19	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	c0002	2367	85	11	12	50	3	9	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	c0003	2367	62	6	10	41	3	2	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	c0004	2367	22	11	5	0	1	5	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	c0005	2367	9	8	1	0	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	c0006	2367	6	0	0	6	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	c0007	2367	1	1	0	0	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	c0008	2367	1	1	0	0	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	c0009	2367	1	0	0	0	0	1	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	c0010	2367	1	1	0	0	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	c0011	2367	1	0	1	0	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	c0012	2367	1	0	0	1	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	c0013	2367	1	1	0	0	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	c0014	2367	1	0	0	1	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	c0015	2367	1	0	0	1	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	c0016	2367	1	0	0	1	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	c0017	2367	1	0	0	1	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	c0018	2367	1	1	0	0	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	c0019	2367	1	0	0	1	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	c0020	2367	1	1	0	0	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	c0021	2367	1	1	0	0	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB3_chr17_47248827_47318743	0/0	c0022	2367	1	0	0	1	0	0	copy fasta	ITGB3	chr17	47248827	47318743
ITGB4_chr17_75716459_75762818	1/0	c0001	5469	80	46	10	17	3	3	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/1	c0002	5469	74	13	12	26	7	15	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0003	5469	73	5	20	35	4	9	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0004	5469	29	3	3	16	1	6	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0005	5469	27	2	3	16	0	6	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0006	5469	23	1	4	16	0	2	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0007	5469	19	0	4	14	0	1	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0008	5469	4	0	4	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0009	5469	3	3	0	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0010	5469	3	3	0	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0011	5469	3	0	0	3	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0012	5469	2	0	1	0	1	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0013	5469	2	1	1	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0014	5469	2	0	0	2	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0015	5469	2	0	2	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0016	5469	2	2	0	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0017	5469	2	0	2	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818