JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ITGB4_chr17_75716459_75762818	0/0	c0018	5469	1	1	0	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0019	5469	1	0	1	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0020	5469	1	0	0	0	0	1	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0021	5469	1	0	0	1	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0022	5469	1	0	0	1	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0023	5469	1	0	0	1	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0024	5469	1	1	0	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0025	5469	1	0	0	1	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0026	5469	1	0	1	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0027	5469	1	0	0	1	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0028	5469	1	0	1	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0029	5469	1	0	0	1	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0030	5469	1	1	0	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0031	5469	1	1	0	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0032	5469	1	0	0	1	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0033	5469	1	0	0	1	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0034	5469	1	1	0	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0035	5469	1	1	0	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0036	5469	1	1	0	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0037	5469	1	0	0	1	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0038	5469	1	0	0	0	0	1	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0039	5469	1	0	0	1	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0040	5469	1	1	0	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0041	5469	1	1	0	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0042	5469	1	0	0	1	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0043	5469	1	0	1	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0044	5469	1	1	0	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0045	5469	1	0	0	1	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0046	5469	1	1	0	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0047	5469	1	0	0	1	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0048	5469	1	1	0	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB4_chr17_75716459_75762818	0/0	c0049	5469	1	1	0	0	0	0	copy fasta	ITGB4	chr17	75716459	75762818
ITGB5_chr3_124756948_124892365	1/0	c0001	2400	157	39	32	65	8	12	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	c0002	2400	61	10	12	33	3	3	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	c0003	2400	42	1	1	37	0	3	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	c0004	2391	25	0	8	11	0	6	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	c0005	2400	19	2	5	8	0	4	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	c0006	2400	8	6	1	0	0	1	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	c0007	2400	8	7	1	0	0	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	c0008	2400	6	6	0	0	0	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	c0009	2400	3	3	0	0	0	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/1	c0010	2391	2	0	0	0	1	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	c0011	2400	2	2	0	0	0	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	c0012	2400	2	0	0	2	0	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	c0013	2400	2	2	0	0	0	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	c0014	2400	2	0	0	2	0	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	c0015	2400	2	0	0	2	0	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	c0016	2400	1	0	0	0	1	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	c0017	2400	1	1	0	0	0	0	copy fasta	ITGB5	chr3	124756948	124892365
ITGB5_chr3_124756948_124892365	0/0	c0018	2391	1	0	0	1	0	0	copy fasta	ITGB5	chr3	124756948	124892365