JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ITGB7_chr12_53186323_53212251	0/0	c0022	2397	1	1	0	0	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB7_chr12_53186323_53212251	0/0	c0023	2397	1	0	1	0	0	0	copy fasta	ITGB7	chr12	53186323	53212251
ITGB8_chr7_20325900_20420754	1/0	c0001	2310	198	39	40	83	6	29	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/1	c0002	2310	65	5	5	46	0	8	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	c0003	2310	43	15	12	2	6	8	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	c0004	2310	15	12	3	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	c0005	2310	8	0	0	8	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	c0006	2310	3	2	1	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	c0007	2310	3	2	1	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	c0008	2310	1	1	0	0	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	c0009	2310	1	0	0	1	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	c0010	2310	1	0	0	1	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	c0011	2310	1	0	0	0	0	1	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	c0012	2310	1	0	0	1	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	c0013	2310	1	0	0	1	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGB8_chr7_20325900_20420754	0/0	c0014	2310	1	0	0	1	0	0	copy fasta	ITGB8	chr7	20325900	20420754
ITGBL1_chr13_101447675_101721446	1/0	c0001	1485	117	32	27	40	5	12	copy fasta	ITGBL1	chr13	101447675	101721446
ITGBL1_chr13_101447675_101721446	0/1	c0002	1485	43	4	15	14	1	8	copy fasta	ITGBL1	chr13	101447675	101721446
ITGBL1_chr13_101447675_101721446	0/0	c0003	1485	39	3	2	28	2	4	copy fasta	ITGBL1	chr13	101447675	101721446
ITGBL1_chr13_101447675_101721446	0/0	c0004	1485	27	14	3	8	0	2	copy fasta	ITGBL1	chr13	101447675	101721446
ITGBL1_chr13_101447675_101721446	0/0	c0005	1485	17	12	3	0	1	1	copy fasta	ITGBL1	chr13	101447675	101721446
ITGBL1_chr13_101447675_101721446	0/0	c0006	1485	15	0	2	9	0	4	copy fasta	ITGBL1	chr13	101447675	101721446
ITGBL1_chr13_101447675_101721446	0/0	c0007	1485	12	2	0	10	0	0	copy fasta	ITGBL1	chr13	101447675	101721446
ITGBL1_chr13_101447675_101721446	0/0	c0008	1485	6	1	0	3	0	2	copy fasta	ITGBL1	chr13	101447675	101721446
ITGBL1_chr13_101447675_101721446	0/0	c0009	1485	5	1	3	0	1	0	copy fasta	ITGBL1	chr13	101447675	101721446
ITGBL1_chr13_101447675_101721446	0/0	c0010	1485	5	5	0	0	0	0	copy fasta	ITGBL1	chr13	101447675	101721446
ITGBL1_chr13_101447675_101721446	0/0	c0011	1485	4	3	1	0	0	0	copy fasta	ITGBL1	chr13	101447675	101721446
ITGBL1_chr13_101447675_101721446	0/0	c0012	1485	3	0	0	2	0	1	copy fasta	ITGBL1	chr13	101447675	101721446
ITGBL1_chr13_101447675_101721446	0/0	c0013	1485	3	2	1	0	0	0	copy fasta	ITGBL1	chr13	101447675	101721446
ITGBL1_chr13_101447675_101721446	0/0	c0014	1485	2	2	0	0	0	0	copy fasta	ITGBL1	chr13	101447675	101721446
ITGBL1_chr13_101447675_101721446	0/0	c0015	1485	1	0	0	1	0	0	copy fasta	ITGBL1	chr13	101447675	101721446
ITGBL1_chr13_101447675_101721446	0/0	c0016	1485	1	1	0	0	0	0	copy fasta	ITGBL1	chr13	101447675	101721446
ITGBL1_chr13_101447675_101721446	0/0	c0017	1485	1	0	0	1	0	0	copy fasta	ITGBL1	chr13	101447675	101721446
ITGBL1_chr13_101447675_101721446	0/0	c0018	1485	1	1	0	0	0	0	copy fasta	ITGBL1	chr13	101447675	101721446
ITGBL1_chr13_101447675_101721446	0/0	c0019	1485	1	1	0	0	0	0	copy fasta	ITGBL1	chr13	101447675	101721446
ITGBL1_chr13_101447675_101721446	0/0	c0020	1485	1	0	1	0	0	0	copy fasta	ITGBL1	chr13	101447675	101721446
ITGBL1_chr13_101447675_101721446	0/0	c0021	1485	1	1	0	0	0	0	copy fasta	ITGBL1	chr13	101447675	101721446
ITGBL1_chr13_101447675_101721446	0/0	c0022	1485	1	1	0	0	0	0	copy fasta	ITGBL1	chr13	101447675	101721446
ITIH1_chr3_52772599_52797062	1/1	c0001	2736	183	30	44	68	10	29	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	c0002	2736	124	2	31	83	3	5	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	c0003	2736	21	21	0	0	0	0	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	c0004	2736	11	10	0	0	0	1	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	c0005	2736	9	0	0	9	0	0	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	c0006	2736	7	5	0	2	0	0	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	c0007	2736	6	0	0	5	0	1	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	c0008	2736	6	0	3	0	3	0	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	c0009	2736	6	6	0	0	0	0	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	c0010	2736	5	4	1	0	0	0	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	c0011	2736	3	3	0	0	0	0	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	c0012	2736	3	0	0	3	0	0	copy fasta	ITIH1	chr3	52772599	52797062