JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ITIH1_chr3_52772599_52797062	0/0	c0013	2736	3	0	3	0	0	0	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	c0014	2736	2	0	2	0	0	0	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	c0015	2736	2	2	0	0	0	0	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	c0016	2736	2	2	0	0	0	0	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	c0017	2736	2	1	1	0	0	0	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	c0018	2736	1	1	0	0	0	0	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	c0019	2736	1	1	0	0	0	0	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	c0020	2736	1	0	0	1	0	0	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	c0021	2736	1	0	0	0	0	1	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	c0022	2736	1	0	0	0	0	1	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	c0023	2736	1	1	0	0	0	0	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	c0024	2736	1	0	1	0	0	0	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	c0025	2736	1	0	0	0	0	1	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	c0026	2736	1	0	0	0	0	1	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	c0027	2736	1	1	0	0	0	0	copy fasta	ITIH1	chr3	52772599	52797062
ITIH1_chr3_52772599_52797062	0/0	c0028	2736	1	0	0	1	0	0	copy fasta	ITIH1	chr3	52772599	52797062
ITIH2_chr10_7698316_7754520	0/1	c0001	2841	205	49	34	90	8	23	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	c0002	2841	86	18	18	43	2	5	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	c0003	2841	40	1	3	34	0	2	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	c0004	2841	11	0	6	3	0	2	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	1/0	c0005	2841	5	4	0	0	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	c0006	2841	5	0	2	0	2	1	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	c0007	2841	5	5	0	0	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	c0008	2841	2	2	0	0	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	c0009	2841	2	2	0	0	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	c0010	2841	2	2	0	0	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	c0011	2841	2	0	0	2	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	c0012	2841	1	0	0	1	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	c0013	2841	1	0	0	1	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	c0014	2841	1	0	1	0	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	c0015	2841	1	1	0	0	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	c0016	2841	1	1	0	0	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	c0017	2841	1	0	0	1	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	c0018	2841	1	1	0	0	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	c0019	2841	1	1	0	0	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	c0020	2841	1	0	0	1	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	c0021	2841	1	0	0	1	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	c0022	2841	1	0	0	0	0	1	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	c0023	2841	1	1	0	0	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	c0024	2841	1	1	0	0	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	c0025	2841	1	0	0	1	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH2_chr10_7698316_7754520	0/0	c0026	2841	1	1	0	0	0	0	copy fasta	ITIH2	chr10	7698316	7754520
ITIH3_chr3_52789796_52813797	1/1	c0001	2673	149	19	27	68	9	24	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0002	2673	91	7	23	49	5	7	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0003	2673	49	0	9	40	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0004	2673	31	13	14	2	1	1	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0005	2673	14	14	0	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0006	2673	6	5	1	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0007	2673	5	5	0	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0008	2673	5	0	0	0	0	5	copy fasta	ITIH3	chr3	52789796	52813797