JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ITIH3_chr3_52789796_52813797	0/0	c0009	2673	5	4	1	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0010	2673	5	5	0	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0011	2673	4	0	0	4	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0012	2673	4	4	0	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0013	2673	4	4	0	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0014	2673	4	1	0	3	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0015	2673	3	1	1	1	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0016	2673	3	0	0	3	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0017	2673	3	0	2	0	0	1	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0018	2673	3	0	0	1	0	2	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0019	2673	2	2	0	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0020	2673	2	1	1	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0021	2673	2	2	0	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0022	2673	1	0	1	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0023	2673	1	0	0	0	1	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0024	2673	1	0	0	1	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0025	2673	1	0	0	1	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0026	2673	1	1	0	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0027	2673	1	0	0	1	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0028	2673	1	0	1	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0029	2673	1	1	0	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0030	2673	1	0	0	1	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0031	2673	1	0	1	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0032	2673	1	0	1	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0033	2673	1	0	0	1	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0034	2683	1	0	0	1	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0035	2673	1	1	0	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0036	2673	1	0	1	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0037	2673	1	1	0	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0038	2673	1	1	0	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0039	2673	1	0	0	1	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0040	2673	1	1	0	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH3_chr3_52789796_52813797	0/0	c0041	2673	1	1	0	0	0	0	copy fasta	ITIH3	chr3	52789796	52813797
ITIH4_chr3_52807962_52835672	1/1	c0001	2793	170	26	36	76	9	21	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	c0002	2793	99	17	24	58	0	0	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	c0003	2793	36	33	3	0	0	0	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	c0004	2793	29	5	13	9	1	1	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	c0005	2793	27	0	6	12	4	5	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	c0006	2793	13	0	0	2	0	11	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	c0007	2793	3	0	3	0	0	0	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	c0008	2793	1	1	0	0	0	0	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	c0009	2793	1	1	0	0	0	0	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	c0010	2793	1	0	0	1	0	0	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	c0011	2793	1	0	0	0	0	1	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	c0012	2793	1	1	0	0	0	0	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	c0013	2793	1	0	0	1	0	0	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	c0014	2793	1	0	0	1	0	0	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	c0015	2793	1	0	1	0	0	0	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	c0016	2793	1	0	0	0	0	1	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	c0017	2793	1	0	0	1	0	0	copy fasta	ITIH4	chr3	52807962	52835672