JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ITIH4_chr3_52807962_52835672	0/0	c0018	2793	1	0	0	1	0	0	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	c0019	2793	1	1	0	0	0	0	copy fasta	ITIH4	chr3	52807962	52835672
ITIH4_chr3_52807962_52835672	0/0	c0020	2793	1	1	0	0	0	0	copy fasta	ITIH4	chr3	52807962	52835672
ITIH5_chr10_7554270_7671966	0/0	c0001	2829	54	7	13	25	2	7	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0002	2829	41	1	7	28	3	2	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0003	2829	31	9	4	11	0	7	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0004	2829	31	5	14	5	2	5	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0005	2829	27	0	5	18	0	4	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0006	2829	19	0	2	12	2	3	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0007	2829	15	6	0	7	0	2	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	1/0	c0008	2829	10	3	2	1	0	3	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/1	c0009	2829	7	0	2	0	3	1	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0010	2829	6	0	1	1	0	4	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0011	2830	4	4	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0012	2829	4	0	0	4	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0013	2830	3	3	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0014	2830	3	3	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0015	2829	3	3	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0016	2829	2	0	2	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0017	2829	2	2	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0018	2829	2	0	2	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0019	2829	2	1	1	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0020	2829	2	2	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0021	2829	2	2	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0022	2829	2	0	2	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0023	2829	2	0	0	0	1	1	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0024	2829	2	0	2	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0025	2830	2	2	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0026	2830	2	2	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0027	2829	2	0	0	2	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0028	2829	2	0	2	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0029	2829	2	0	0	2	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0030	2830	2	2	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0031	2829	1	0	0	1	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0032	2829	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0033	2829	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0034	2830	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0035	2829	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0036	2829	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0037	2829	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0038	2830	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0039	2829	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0040	2829	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0041	2830	1	0	0	1	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0042	2830	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0043	2829	1	0	0	1	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0044	2829	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0045	2829	1	0	0	0	0	1	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0046	2829	1	0	1	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0047	2829	1	0	0	1	0	0	copy fasta	ITIH5	chr10	7554270	7671966