JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ALOX15B_chr17_8034059_8054134	0/0	c0037	2031	1	0	0	0	1	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0038	2031	1	0	1	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0039	2031	1	1	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0040	2069	1	0	0	1	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0041	2031	1	0	0	0	0	1	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0042	2031	1	0	0	1	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0043	2031	1	0	0	1	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0044	2031	1	1	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0045	2031	1	1	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0046	2031	1	1	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0047	2031	1	0	0	1	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0048	2031	1	1	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0049	2031	1	1	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0050	2031	1	1	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0051	2031	1	1	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0052	2031	1	1	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15B_chr17_8034059_8054134	0/0	c0053	2031	1	1	0	0	0	0	copy fasta	ALOX15B	chr17	8034059	8054134
ALOX15_chr17_4625919_4646678	1/0	c0001	1989	243	36	52	117	9	28	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/1	c0002	1989	156	32	19	92	4	8	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	c0003	1989	11	10	1	0	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	c0004	1989	10	0	6	0	0	4	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	c0005	1989	9	0	2	0	1	6	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	c0006	1989	9	8	1	0	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	c0007	1989	7	1	6	0	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	c0008	1989	6	6	0	0	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	c0009	1989	4	0	0	4	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	c0010	1989	2	2	0	0	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	c0011	1989	2	2	0	0	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	c0012	1978	1	0	0	1	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	c0013	1989	1	0	0	1	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	c0014	1989	1	0	0	0	0	1	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	c0015	1989	1	1	0	0	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	c0016	1989	1	0	0	1	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	c0017	1989	1	0	0	1	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	c0018	1989	1	0	0	0	0	1	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	c0019	1989	1	1	0	0	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	c0020	1989	1	0	0	1	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	c0021	1989	1	0	1	0	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	c0022	1989	1	1	0	0	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	c0023	1989	1	0	0	1	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX15_chr17_4625919_4646678	0/0	c0024	1989	1	0	0	1	0	0	copy fasta	ALOX15	chr17	4625919	4646678
ALOX5AP_chr13_30730543_30769426	1/1	c0001	486	421	88	78	190	16	47	copy fasta	ALOX5AP	chr13	30730543	30769426
ALOX5AP_chr13_30730543_30769426	0/0	c0002	486	1	0	0	0	0	1	copy fasta	ALOX5AP	chr13	30730543	30769426
ALOX5_chr10_45369216_45451117	0/1	c0001	2025	172	30	33	77	6	25	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	c0002	2025	57	11	9	27	5	5	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	c0003	2025	36	23	5	8	0	0	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	c0004	2025	31	11	2	16	2	0	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	c0005	2025	16	5	1	9	0	1	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	c0006	2025	7	6	0	1	0	0	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	c0007	2025	6	0	0	6	0	0	copy fasta	ALOX5	chr10	45369216	45451117