JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ITIH5_chr10_7554270_7671966	0/0	c0048	2829	1	0	0	0	0	1	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0049	2829	1	0	1	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0050	2829	1	0	0	0	0	1	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0051	2829	1	0	0	1	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0052	2829	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0053	2829	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0054	2829	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0055	2829	1	0	1	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0056	2830	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0057	2830	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0058	2829	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0059	2829	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0060	2829	1	0	1	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0061	2829	1	0	0	0	0	1	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0062	2829	1	0	0	1	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0063	2830	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0064	2829	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0065	2830	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0066	2830	1	0	0	1	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0067	2829	1	0	0	0	1	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0068	2829	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0069	2829	1	0	0	1	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0070	2829	1	0	1	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0071	2829	1	0	0	0	0	1	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0072	2829	1	0	1	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0073	2829	1	0	1	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0074	2829	1	0	0	1	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0075	2829	1	0	0	1	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0076	2829	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0077	2829	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0078	2829	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0079	2830	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0080	2829	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0081	2829	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0082	2830	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0083	2829	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH5_chr10_7554270_7671966	0/0	c0084	2829	1	1	0	0	0	0	copy fasta	ITIH5	chr10	7554270	7671966
ITIH6_chrX_54743918_54803255	1/1	c0001	3942	250	47	46	119	10	26	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	c0002	3942	14	12	2	0	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	c0003	3942	6	0	6	0	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	c0004	3942	4	0	0	4	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	c0005	3942	3	3	0	0	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	c0006	3942	2	0	2	0	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	c0007	3942	2	2	0	0	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	c0008	3942	1	0	0	0	0	1	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	c0009	4005	1	0	0	0	0	1	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	c0010	4006	1	0	0	1	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	c0011	3942	1	1	0	0	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	c0012	3942	1	1	0	0	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	c0013	3942	1	0	1	0	0	0	copy fasta	ITIH6	chrX	54743918	54803255