JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ITIH6_chrX_54743918_54803255	0/0	c0014	3942	1	0	1	0	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	c0015	3942	1	1	0	0	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	c0016	3942	1	0	0	0	0	1	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	c0017	3942	1	0	0	0	0	1	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	c0018	3939	1	0	0	1	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	c0019	3942	1	0	0	1	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	c0020	3942	1	0	0	1	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	c0021	3942	1	0	0	0	1	0	copy fasta	ITIH6	chrX	54743918	54803255
ITIH6_chrX_54743918_54803255	0/0	c0022	3942	1	1	0	0	0	0	copy fasta	ITIH6	chrX	54743918	54803255
ITK_chr5_157175840_157260185	1/1	c0001	1863	335	90	59	133	13	38	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	c0002	1863	4	3	1	0	0	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	c0003	1863	2	0	0	2	0	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	c0004	1863	1	1	0	0	0	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	c0005	1863	1	0	0	0	1	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	c0006	1863	1	0	0	0	0	1	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	c0007	1863	1	0	0	1	0	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	c0008	1863	1	0	0	0	0	1	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	c0009	1863	1	1	0	0	0	0	copy fasta	ITK	chr5	157175840	157260185
ITK_chr5_157175840_157260185	0/0	c0010	1863	1	1	0	0	0	0	copy fasta	ITK	chr5	157175840	157260185
ITLN1_chr1_160871540_160890180	0/1	c0001	942	221	20	39	133	7	21	copy fasta	ITLN1	chr1	160871540	160890180
ITLN1_chr1_160871540_160890180	1/0	c0002	942	147	40	20	63	7	16	copy fasta	ITLN1	chr1	160871540	160890180
ITLN1_chr1_160871540_160890180	0/0	c0003	942	16	12	0	3	0	1	copy fasta	ITLN1	chr1	160871540	160890180
ITLN1_chr1_160871540_160890180	0/0	c0004	942	11	0	0	8	0	3	copy fasta	ITLN1	chr1	160871540	160890180
ITLN1_chr1_160871540_160890180	0/0	c0005	942	8	8	0	0	0	0	copy fasta	ITLN1	chr1	160871540	160890180
ITLN1_chr1_160871540_160890180	0/0	c0006	942	6	6	0	0	0	0	copy fasta	ITLN1	chr1	160871540	160890180
ITLN1_chr1_160871540_160890180	0/0	c0007	942	6	6	0	0	0	0	copy fasta	ITLN1	chr1	160871540	160890180
ITLN1_chr1_160871540_160890180	0/0	c0008	942	2	0	0	2	0	0	copy fasta	ITLN1	chr1	160871540	160890180
ITLN1_chr1_160871540_160890180	0/0	c0009	942	2	2	0	0	0	0	copy fasta	ITLN1	chr1	160871540	160890180
ITLN1_chr1_160871540_160890180	0/0	c0010	942	1	0	0	0	0	1	copy fasta	ITLN1	chr1	160871540	160890180
ITLN1_chr1_160871540_160890180	0/0	c0011	942	1	0	0	0	1	0	copy fasta	ITLN1	chr1	160871540	160890180
ITLN1_chr1_160871540_160890180	0/0	c0012	942	1	1	0	0	0	0	copy fasta	ITLN1	chr1	160871540	160890180
ITLN1_chr1_160871540_160890180	0/0	c0013	942	1	0	0	1	0	0	copy fasta	ITLN1	chr1	160871540	160890180
ITLN1_chr1_160871540_160890180	0/0	c0014	942	1	0	0	0	1	0	copy fasta	ITLN1	chr1	160871540	160890180
ITLN1_chr1_160871540_160890180	0/0	c0015	942	1	1	0	0	0	0	copy fasta	ITLN1	chr1	160871540	160890180
ITLN1_chr1_160871540_160890180	0/0	c0016	942	1	0	0	1	0	0	copy fasta	ITLN1	chr1	160871540	160890180
ITLN1_chr1_160871540_160890180	0/0	c0017	942	1	0	0	1	0	0	copy fasta	ITLN1	chr1	160871540	160890180
ITLN1_chr1_160871540_160890180	0/0	c0018	942	1	0	1	0	0	0	copy fasta	ITLN1	chr1	160871540	160890180
ITLN2_chr1_160940025_160959809	0/1	c0001	978	226	17	51	127	6	24	copy fasta	ITLN2	chr1	160940025	160959809
ITLN2_chr1_160940025_160959809	1/0	c0002	978	206	47	33	93	9	23	copy fasta	ITLN2	chr1	160940025	160959809
ITLN2_chr1_160940025_160959809	0/0	c0003	978	9	9	0	0	0	0	copy fasta	ITLN2	chr1	160940025	160959809
ITLN2_chr1_160940025_160959809	0/0	c0004	978	6	6	0	0	0	0	copy fasta	ITLN2	chr1	160940025	160959809
ITLN2_chr1_160940025_160959809	0/0	c0005	978	6	3	2	0	1	0	copy fasta	ITLN2	chr1	160940025	160959809
ITLN2_chr1_160940025_160959809	0/0	c0006	978	5	3	0	0	0	2	copy fasta	ITLN2	chr1	160940025	160959809
ITLN2_chr1_160940025_160959809	0/0	c0007	978	5	5	0	0	0	0	copy fasta	ITLN2	chr1	160940025	160959809
ITLN2_chr1_160940025_160959809	0/0	c0008	978	5	0	0	5	0	0	copy fasta	ITLN2	chr1	160940025	160959809
ITLN2_chr1_160940025_160959809	0/0	c0009	978	4	4	0	0	0	0	copy fasta	ITLN2	chr1	160940025	160959809
ITLN2_chr1_160940025_160959809	0/0	c0010	978	2	2	0	0	0	0	copy fasta	ITLN2	chr1	160940025	160959809
ITLN2_chr1_160940025_160959809	0/0	c0011	978	1	1	0	0	0	0	copy fasta	ITLN2	chr1	160940025	160959809
ITLN2_chr1_160940025_160959809	0/0	c0012	978	1	0	0	0	1	0	copy fasta	ITLN2	chr1	160940025	160959809
ITLN2_chr1_160940025_160959809	0/0	c0013	978	1	0	0	0	1	0	copy fasta	ITLN2	chr1	160940025	160959809