JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ITLN2_chr1_160940025_160959809	0/0	c0014	978	1	0	0	1	0	0	copy fasta	ITLN2	chr1	160940025	160959809
ITLN2_chr1_160940025_160959809	0/0	c0015	978	1	1	0	0	0	0	copy fasta	ITLN2	chr1	160940025	160959809
ITLN2_chr1_160940025_160959809	0/0	c0016	978	1	0	0	0	0	1	copy fasta	ITLN2	chr1	160940025	160959809
ITM2A_chrX_79355384_79372334	1/1	c0001	792	330	80	60	145	11	32	copy fasta	ITM2A	chrX	79355384	79372334
ITM2A_chrX_79355384_79372334	0/0	c0002	792	2	0	1	0	1	0	copy fasta	ITM2A	chrX	79355384	79372334
ITM2A_chrX_79355384_79372334	0/0	c0003	791	1	0	0	1	0	0	copy fasta	ITM2A	chrX	79355384	79372334
ITM2A_chrX_79355384_79372334	0/0	c0004	792	1	0	0	0	1	0	copy fasta	ITM2A	chrX	79355384	79372334
ITM2B_chr13_48228206_48275357	1/1	c0001	801	296	85	56	120	8	25	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	c0002	801	31	6	2	18	0	5	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	c0003	801	3	0	3	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	c0004	801	2	1	1	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	c0005	801	1	1	0	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	c0006	801	1	1	0	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	c0007	801	1	0	0	1	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	c0008	801	1	0	1	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	c0009	801	1	0	0	1	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2B_chr13_48228206_48275357	0/0	c0010	801	1	0	1	0	0	0	copy fasta	ITM2B	chr13	48228206	48275357
ITM2C_chr2_230859942_230884248	1/0	c0001	804	207	68	44	59	7	28	copy fasta	ITM2C	chr2	230859942	230884248
ITM2C_chr2_230859942_230884248	0/1	c0002	804	166	9	35	91	11	19	copy fasta	ITM2C	chr2	230859942	230884248
ITM2C_chr2_230859942_230884248	0/0	c0003	804	6	6	0	0	0	0	copy fasta	ITM2C	chr2	230859942	230884248
ITM2C_chr2_230859942_230884248	0/0	c0004	804	6	6	0	0	0	0	copy fasta	ITM2C	chr2	230859942	230884248
ITM2C_chr2_230859942_230884248	0/0	c0005	804	4	4	0	0	0	0	copy fasta	ITM2C	chr2	230859942	230884248
ITM2C_chr2_230859942_230884248	0/0	c0006	804	2	1	1	0	0	0	copy fasta	ITM2C	chr2	230859942	230884248
ITM2C_chr2_230859942_230884248	0/0	c0007	804	2	0	0	2	0	0	copy fasta	ITM2C	chr2	230859942	230884248
ITM2C_chr2_230859942_230884248	0/0	c0008	804	1	1	0	0	0	0	copy fasta	ITM2C	chr2	230859942	230884248
ITM2C_chr2_230859942_230884248	0/0	c0009	804	1	0	0	1	0	0	copy fasta	ITM2C	chr2	230859942	230884248
ITM2C_chr2_230859942_230884248	0/0	c0010	804	1	1	0	0	0	0	copy fasta	ITM2C	chr2	230859942	230884248
ITM2C_chr2_230859942_230884248	0/0	c0011	804	1	0	0	1	0	0	copy fasta	ITM2C	chr2	230859942	230884248
ITM2C_chr2_230859942_230884248	0/0	c0012	804	1	0	0	0	0	1	copy fasta	ITM2C	chr2	230859942	230884248
ITPA_chr20_3204498_3228860	1/1	c0001	585	198	43	53	72	11	17	copy fasta	ITPA	chr20	3204498	3228860
ITPA_chr20_3204498_3228860	0/0	c0002	585	108	3	15	65	4	21	copy fasta	ITPA	chr20	3204498	3228860
ITPA_chr20_3204498_3228860	0/0	c0003	585	60	39	3	15	0	3	copy fasta	ITPA	chr20	3204498	3228860
ITPA_chr20_3204498_3228860	0/0	c0004	585	39	2	3	30	2	2	copy fasta	ITPA	chr20	3204498	3228860
ITPA_chr20_3204498_3228860	0/0	c0005	585	5	0	0	1	1	3	copy fasta	ITPA	chr20	3204498	3228860
ITPA_chr20_3204498_3228860	0/0	c0006	585	1	0	0	1	0	0	copy fasta	ITPA	chr20	3204498	3228860
ITPA_chr20_3204498_3228860	0/0	c0007	585	1	0	0	1	0	0	copy fasta	ITPA	chr20	3204498	3228860
ITPA_chr20_3204498_3228860	0/0	c0008	585	1	0	0	1	0	0	copy fasta	ITPA	chr20	3204498	3228860
ITPA_chr20_3204498_3228860	0/0	c0009	585	1	1	0	0	0	0	copy fasta	ITPA	chr20	3204498	3228860
ITPK1_chr14_92931914_93120925	0/1	c0001	1245	211	69	49	54	11	27	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	c0002	1245	26	5	1	13	3	4	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	c0003	1245	2	2	0	0	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	c0004	1245	1	0	1	0	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	c0005	1245	1	0	0	0	0	1	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	c0006	1245	1	0	0	1	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPK1_chr14_92931914_93120925	0/0	c0007	1245	1	0	1	0	0	0	copy fasta	ITPK1	chr14	92931914	93120925
ITPKA_chr15_41488874_41508551	1/1	c0001	1386	402	80	80	190	10	40	copy fasta	ITPKA	chr15	41488874	41508551
ITPKA_chr15_41488874_41508551	0/0	c0002	1386	14	10	2	0	0	2	copy fasta	ITPKA	chr15	41488874	41508551
ITPKA_chr15_41488874_41508551	0/0	c0003	1386	3	0	0	3	0	0	copy fasta	ITPKA	chr15	41488874	41508551
ITPKA_chr15_41488874_41508551	0/0	c0004	1386	2	0	0	0	0	2	copy fasta	ITPKA	chr15	41488874	41508551
ITPKA_chr15_41488874_41508551	0/0	c0005	1386	1	0	0	0	0	1	copy fasta	ITPKA	chr15	41488874	41508551