JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ITPKA_chr15_41488874_41508551	0/0	c0006	1386	1	0	0	0	0	1	copy fasta	ITPKA	chr15	41488874	41508551
ITPKA_chr15_41488874_41508551	0/0	c0007	1386	1	0	0	1	0	0	copy fasta	ITPKA	chr15	41488874	41508551
ITPKA_chr15_41488874_41508551	0/0	c0008	1386	1	1	0	0	0	0	copy fasta	ITPKA	chr15	41488874	41508551
ITPKA_chr15_41488874_41508551	0/0	c0009	1386	1	1	0	0	0	0	copy fasta	ITPKA	chr15	41488874	41508551
ITPKB_chr1_226626690_226744282	0/0	c0001	2832	102	29	21	39	4	9	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	c0002	2841	82	7	12	48	4	11	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/1	c0003	2841	79	20	9	38	1	10	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	c0004	2841	22	20	1	0	0	1	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	c0005	2841	16	0	3	13	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	c0006	2841	10	0	7	3	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	1/0	c0007	2841	5	0	3	0	1	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	c0008	2832	4	0	0	3	0	1	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	c0009	2841	3	3	0	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	c0010	2841	2	0	0	2	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	c0011	2841	2	0	0	2	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	c0012	2841	2	0	0	2	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	c0013	2841	2	2	0	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	c0014	2841	2	2	0	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	c0015	2829	2	0	0	2	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	c0016	2841	1	0	1	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	c0017	2841	1	0	0	1	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	c0018	2841	1	0	0	0	1	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	c0019	2841	1	0	0	1	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	c0020	2841	1	0	0	0	1	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	c0021	2841	1	0	1	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	c0022	2841	1	1	0	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	c0023	2841	1	0	0	1	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	c0024	2841	1	1	0	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	c0025	2832	1	0	0	1	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	c0026	2832	1	1	0	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	c0027	2832	1	1	0	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	c0028	2832	1	0	0	1	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	c0029	2841	1	1	0	0	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKB_chr1_226626690_226744282	0/0	c0030	2841	1	0	0	1	0	0	copy fasta	ITPKB	chr1	226626690	226744282
ITPKC_chr19_40712112_40745860	1/1	c0001	2052	290	69	57	113	16	33	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	c0002	2052	80	17	4	53	2	4	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	c0003	2052	4	4	0	0	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	c0004	2052	3	1	2	0	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	c0005	2052	1	1	0	0	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	c0006	2052	1	1	0	0	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	c0007	2052	1	0	0	1	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	c0008	2052	1	1	0	0	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	c0009	2052	1	0	0	0	0	1	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	c0010	2052	1	0	1	0	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	c0011	2052	1	0	0	1	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	c0012	2052	1	0	0	1	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	c0013	2052	1	1	0	0	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	c0014	2052	1	1	0	0	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPKC_chr19_40712112_40745860	0/0	c0015	2052	1	0	0	1	0	0	copy fasta	ITPKC	chr19	40712112	40745860
ITPR1_chr3_4488348_4852506	0/0	c0001	8277	14	4	1	8	1	0	copy fasta	ITPR1	chr3	4488348	4852506