JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ITPR1_chr3_4488348_4852506	0/0	c0002	8277	10	3	2	1	2	2	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0003	8277	6	2	2	2	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0004	8277	5	2	2	1	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0005	8277	5	1	0	1	0	3	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0006	8277	5	2	0	3	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0007	8277	4	1	1	2	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0008	8277	3	2	0	1	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0009	8277	3	2	1	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0010	8277	3	1	2	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0011	8277	3	0	2	0	0	1	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0012	8277	3	2	0	0	0	1	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0013	8277	3	1	1	1	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0014	8277	3	0	2	1	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0015	8277	3	0	1	1	0	1	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0016	8277	3	1	1	1	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0017	8277	2	1	1	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0018	8277	2	0	1	1	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0019	8277	2	1	0	1	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0020	8277	2	0	0	0	1	1	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0021	8277	2	1	0	0	1	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0022	8277	2	0	0	2	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0023	8277	2	1	1	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0024	8277	2	0	0	1	0	1	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0025	8277	2	1	0	1	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0026	8277	2	2	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0027	8277	2	1	0	1	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0028	8277	2	0	0	2	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0029	8277	1	0	0	0	0	1	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0030	8277	1	0	0	0	0	1	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0031	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0032	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0033	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0034	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0035	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0036	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0037	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0038	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0039	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0040	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0041	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0042	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0043	8277	1	0	0	1	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0044	8277	1	0	1	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0045	8277	1	0	0	1	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0046	8277	1	0	0	1	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0047	8277	1	0	1	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0048	8277	1	0	1	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0049	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0050	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0051	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506