JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ITPR1_chr3_4488348_4852506	0/0	c0052	8277	1	0	0	0	0	1	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0053	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0054	8277	1	0	1	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0055	8277	1	0	1	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0056	8277	1	0	1	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0057	8277	1	0	1	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0058	8277	1	0	0	0	0	1	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0059	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0060	8277	1	0	0	1	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0061	8277	1	0	0	0	0	1	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0062	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0063	8277	1	0	1	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0064	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0065	8277	1	0	1	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0066	8277	1	0	0	0	0	1	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0067	8277	1	0	0	0	1	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0068	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0069	8277	1	0	0	0	0	1	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0070	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0071	8277	1	0	0	0	0	1	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0072	8277	1	0	0	1	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0073	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0074	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0075	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0076	8277	1	0	1	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0077	8277	1	0	0	0	0	1	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0078	8277	1	0	1	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0079	8277	1	0	0	1	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0080	8277	1	0	1	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0081	8277	1	0	0	1	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0082	8277	1	0	0	0	0	1	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0083	8277	1	0	1	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0084	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0085	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0086	8277	1	0	1	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0087	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0088	8277	1	0	0	1	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0089	8277	1	0	0	1	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0090	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/1	c0091	8277	1	0	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0092	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0093	8277	1	0	1	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	1/0	c0094	8277	1	0	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0095	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0096	8277	1	0	0	1	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0097	8277	1	0	0	1	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0098	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0099	8277	1	0	0	1	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0100	8277	1	0	1	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0101	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506