JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ITPR1_chr3_4488348_4852506	0/0	c0102	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0103	8277	1	0	1	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR1_chr3_4488348_4852506	0/0	c0104	8277	1	1	0	0	0	0	copy fasta	ITPR1	chr3	4488348	4852506
ITPR2_chr12_26330352_26838194	1/0	c0001	8106	17	8	2	4	0	2	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0002	8106	11	4	4	0	0	3	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0003	8106	6	0	3	2	0	1	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0004	8106	6	0	2	3	0	1	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0005	8106	5	2	1	1	0	1	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0006	8106	4	2	1	1	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0007	8106	4	0	2	0	0	2	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0008	8106	3	1	2	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0009	8106	3	3	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0010	8106	3	3	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0011	8106	3	1	0	0	0	2	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0012	8106	3	0	0	1	2	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0013	8106	3	0	3	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0014	8106	2	2	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0015	8106	2	1	1	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0016	8106	2	2	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0017	8106	2	2	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0018	8106	2	0	1	1	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0019	8106	2	0	2	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/1	c0020	8106	2	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0021	8106	2	0	0	0	1	1	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0022	8106	2	0	1	0	0	1	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0023	8106	2	2	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0024	8106	2	0	0	0	1	1	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0025	8106	2	0	2	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0026	8106	2	0	1	1	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0027	8106	2	0	1	0	1	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0028	8106	2	0	1	0	0	1	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0029	8106	2	0	0	2	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0030	8106	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0031	8106	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0032	8106	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0033	8106	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0034	8106	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0035	8106	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0036	8106	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0037	8106	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0038	8106	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0039	8106	1	0	0	1	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0040	8106	1	0	0	1	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0041	8106	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0042	8106	1	0	0	1	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0043	8106	1	0	1	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0044	8106	1	0	0	1	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0045	8106	1	0	1	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0046	8106	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0047	8106	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194