JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ITPR2_chr12_26330352_26838194	0/0	c0048	8106	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0049	8106	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0050	8106	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0051	8106	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0052	8106	1	0	1	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0053	8106	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0054	8106	1	0	1	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0055	8106	1	0	1	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0056	8106	1	0	0	0	0	1	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0057	8106	1	0	0	0	1	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0058	8106	1	0	1	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0059	8106	1	0	0	0	1	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0060	8106	1	0	0	0	1	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0061	8106	1	0	0	1	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0062	8106	1	0	1	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0063	8106	1	0	0	1	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0064	8106	1	0	0	0	0	1	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0065	8106	1	0	1	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0066	8106	1	0	1	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0067	8106	1	0	1	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR2_chr12_26330352_26838194	0/0	c0068	8106	1	1	0	0	0	0	copy fasta	ITPR2	chr12	26330352	26838194
ITPR3_chr6_33616322_33701562	0/0	c0001	8016	46	2	7	29	0	8	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0002	8016	35	0	14	15	2	4	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0003	8016	32	1	7	21	1	2	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0004	8016	22	1	9	8	2	2	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0005	8016	16	0	1	13	0	2	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0006	8016	13	2	1	9	1	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0007	8016	11	10	1	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	1/0	c0008	8016	10	9	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0009	8016	9	5	4	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0010	8016	9	1	0	8	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0011	8016	7	2	4	0	1	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/1	c0012	8016	6	0	3	0	2	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0013	8016	6	4	1	0	1	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0014	8016	6	0	0	6	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0015	8016	5	5	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0016	8016	5	0	0	3	0	2	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0017	8016	4	2	0	0	0	2	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0018	8016	4	4	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0019	8016	4	1	1	0	1	1	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0020	8016	4	0	1	2	0	1	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0021	8016	3	1	0	1	0	1	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0022	8016	3	0	0	2	0	1	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0023	8016	3	2	1	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0024	8016	3	2	1	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0025	8016	3	2	0	1	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0026	8016	3	2	1	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0027	8016	2	2	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0028	8016	2	0	0	2	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0029	8016	2	2	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562