JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ITPR3_chr6_33616322_33701562	0/0	c0030	8016	2	0	0	2	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0031	8016	2	1	0	1	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0032	8016	2	0	2	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0033	8016	2	2	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0034	8016	2	0	0	0	0	2	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0035	8016	2	0	0	2	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0036	8016	2	1	1	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0037	8016	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0038	8016	1	0	0	1	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0039	8016	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0040	8016	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0041	8016	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0042	8016	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0043	8016	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0044	8016	1	0	1	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0045	8016	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0046	8016	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0047	8016	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0048	8016	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0049	8016	1	0	0	1	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0050	8016	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0051	8016	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0052	8016	1	0	0	1	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0053	8016	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0054	8016	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0055	8016	1	0	1	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0056	8016	1	0	0	1	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0057	8016	1	0	0	1	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0058	8016	1	0	0	1	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0059	8016	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0060	8016	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0061	8016	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0062	8016	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0063	8016	1	0	1	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0064	8016	1	0	1	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0065	8016	1	0	1	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0066	8016	1	0	1	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0067	8016	1	0	1	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0068	8016	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0069	8016	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0070	8016	1	0	0	1	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0071	8016	1	0	0	1	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0072	8016	1	0	0	0	0	1	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0073	8016	1	0	1	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0074	8016	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0075	8016	1	0	0	0	1	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0076	8016	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0077	8016	1	0	0	1	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0078	8016	1	0	0	1	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0079	8016	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562