JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ITPR3_chr6_33616322_33701562	0/0	c0080	8016	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0081	8016	1	0	0	1	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0082	8016	1	0	0	1	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0083	8016	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0084	8016	1	0	0	0	0	1	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0085	8016	1	1	0	0	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPR3_chr6_33616322_33701562	0/0	c0086	8016	1	0	0	1	0	0	copy fasta	ITPR3	chr6	33616322	33701562
ITPRID1_chr7_31509090_31661504	0/0	c0001	3135	52	2	13	29	3	5	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0002	3135	47	8	13	17	0	9	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/1	c0003	3135	44	1	7	27	5	3	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0004	3135	39	8	9	13	3	6	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0005	3135	16	4	4	2	2	4	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0006	3135	8	8	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0007	3135	7	0	0	7	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0008	3135	7	1	5	0	0	1	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0009	3135	7	5	2	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0010	3135	6	1	1	4	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0011	3135	6	1	0	4	1	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0012	3135	5	4	0	0	0	1	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0013	3135	5	5	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0014	3135	5	4	1	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	1/0	c0015	3135	4	2	1	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0016	3135	3	0	0	3	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0017	3135	3	1	1	0	0	1	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0018	3135	3	3	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0019	3135	3	1	0	2	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0020	3135	2	0	0	2	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0021	3135	2	1	1	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0022	3135	2	2	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0023	3135	2	2	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0024	3135	2	1	0	0	0	1	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0025	3135	2	1	1	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0026	3135	2	2	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0027	3135	2	0	2	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0028	3135	2	0	0	2	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0029	3135	2	2	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0030	3135	1	1	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0031	3135	1	0	0	1	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0032	3135	1	1	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0033	3135	1	0	1	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0034	3135	1	0	0	0	0	1	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0035	3135	1	1	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0036	3135	1	0	0	1	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0037	3135	1	1	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0038	3135	1	1	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0039	3135	1	1	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0040	3135	1	1	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0041	3135	1	1	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0042	3135	1	1	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0043	3135	1	0	0	1	0	0	copy fasta	ITPRID1	chr7	31509090	31661504