JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ALOX5_chr10_45369216_45451117	0/0	c0008	2025	3	2	1	0	0	0	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	c0009	2025	2	2	0	0	0	0	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	c0010	2025	2	0	0	0	0	2	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	c0011	2025	2	0	2	0	0	0	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	c0012	2025	1	0	0	1	0	0	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	c0013	2025	1	1	0	0	0	0	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	c0014	2025	1	0	0	1	0	0	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	c0015	2025	1	1	0	0	0	0	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	c0016	2025	1	0	0	1	0	0	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	c0017	2014	1	0	0	1	0	0	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	c0018	2025	1	0	0	1	0	0	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	c0019	2025	1	0	0	1	0	0	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	c0020	2025	1	0	0	0	1	0	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	c0021	2025	1	0	0	0	0	1	copy fasta	ALOX5	chr10	45369216	45451117
ALOX5_chr10_45369216_45451117	0/0	c0022	2025	1	0	1	0	0	0	copy fasta	ALOX5	chr10	45369216	45451117
ALOXE3_chr17_8090900_8123514	1/1	c0001	2136	190	51	31	73	12	21	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	c0002	2136	187	28	40	102	6	11	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	c0003	2136	15	10	1	1	0	3	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	c0004	2136	9	3	0	1	0	5	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	c0005	2136	8	1	7	0	0	0	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	c0006	2136	2	2	0	0	0	0	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	c0007	2136	2	0	2	0	0	0	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	c0008	2136	1	0	0	1	0	0	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	c0009	2136	1	0	1	0	0	0	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	c0010	2136	1	0	0	0	0	1	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	c0011	2136	1	0	0	0	0	1	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	c0012	2136	1	1	0	0	0	0	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	c0013	2136	1	1	0	0	0	0	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	c0014	2136	1	1	0	0	0	0	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	c0015	2136	1	1	0	0	0	0	copy fasta	ALOXE3	chr17	8090900	8123514
ALOXE3_chr17_8090900_8123514	0/0	c0016	2136	1	1	0	0	0	0	copy fasta	ALOXE3	chr17	8090900	8123514
ALPG_chr2_232401844_232415714	0/0	c0001	1599	156	19	34	80	7	16	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	1/0	c0002	1599	65	15	11	19	5	14	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/1	c0003	1599	61	16	10	24	3	7	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	c0004	1599	53	7	5	37	2	2	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	c0005	1599	39	6	10	20	0	3	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	c0006	1599	13	0	0	13	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	c0007	1599	6	6	0	0	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	c0008	1599	5	5	0	0	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	c0009	1599	4	4	0	0	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	c0010	1599	4	4	0	0	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	c0011	1599	4	4	0	0	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	c0012	1599	3	2	1	0	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	c0013	1599	3	0	2	0	1	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	c0014	1599	2	0	0	0	0	2	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	c0015	1599	2	0	0	2	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	c0016	1599	2	2	0	0	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	c0017	1599	1	0	0	1	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	c0018	1599	1	0	1	0	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	c0019	1599	1	0	0	1	0	0	copy fasta	ALPG	chr2	232401844	232415714