JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ITPRID1_chr7_31509090_31661504	0/0	c0044	3135	1	0	1	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0045	3135	1	1	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0046	3135	1	1	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0047	3135	1	1	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0048	3135	1	0	0	1	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0049	3135	1	0	1	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0050	3135	1	1	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID1_chr7_31509090_31661504	0/0	c0051	3135	1	1	0	0	0	0	copy fasta	ITPRID1	chr7	31509090	31661504
ITPRID2_chr2_181886730_181935738	1/1	c0001	3780	175	47	28	72	5	21	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	c0002	3780	48	8	2	31	0	7	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	c0003	3780	24	1	11	11	0	1	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	c0004	3780	17	16	1	0	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	c0005	3780	6	6	0	0	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	c0006	3780	3	2	0	0	0	1	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	c0007	3780	2	2	0	0	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	c0008	3780	2	2	0	0	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	c0009	3780	2	0	0	0	0	2	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	c0010	3780	1	0	0	1	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	c0011	3780	1	0	0	1	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	c0012	3780	1	0	1	0	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	c0013	3780	1	1	0	0	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	c0014	3780	1	0	1	0	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	c0015	3780	1	1	0	0	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	c0016	3780	1	0	0	0	0	1	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	c0017	3780	1	0	0	1	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	c0018	3780	1	0	0	1	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	c0019	3780	1	1	0	0	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	c0020	3780	1	0	0	0	0	1	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	c0021	3780	1	0	0	0	1	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRID2_chr2_181886730_181935738	0/0	c0022	3780	1	1	0	0	0	0	copy fasta	ITPRID2	chr2	181886730	181935738
ITPRIPL1_chr2_96320317_96333353	1/1	c0001	1668	202	54	33	95	9	9	copy fasta	ITPRIPL1	chr2	96320317	96333353
ITPRIPL1_chr2_96320317_96333353	0/0	c0002	1668	132	18	28	56	3	27	copy fasta	ITPRIPL1	chr2	96320317	96333353
ITPRIPL1_chr2_96320317_96333353	0/0	c0003	1668	9	0	0	9	0	0	copy fasta	ITPRIPL1	chr2	96320317	96333353
ITPRIPL1_chr2_96320317_96333353	0/0	c0004	1668	7	6	1	0	0	0	copy fasta	ITPRIPL1	chr2	96320317	96333353
ITPRIPL1_chr2_96320317_96333353	0/0	c0005	1668	5	5	0	0	0	0	copy fasta	ITPRIPL1	chr2	96320317	96333353
ITPRIPL1_chr2_96320317_96333353	0/0	c0006	1668	2	0	0	2	0	0	copy fasta	ITPRIPL1	chr2	96320317	96333353
ITPRIPL1_chr2_96320317_96333353	0/0	c0007	1668	1	0	0	0	0	1	copy fasta	ITPRIPL1	chr2	96320317	96333353
ITPRIPL1_chr2_96320317_96333353	0/0	c0008	1668	1	0	0	0	0	1	copy fasta	ITPRIPL1	chr2	96320317	96333353
ITPRIPL1_chr2_96320317_96333353	0/0	c0009	1668	1	0	0	0	0	1	copy fasta	ITPRIPL1	chr2	96320317	96333353
ITPRIPL1_chr2_96320317_96333353	0/0	c0010	1668	1	0	1	0	0	0	copy fasta	ITPRIPL1	chr2	96320317	96333353
ITPRIPL1_chr2_96320317_96333353	0/0	c0011	1668	1	0	0	0	0	1	copy fasta	ITPRIPL1	chr2	96320317	96333353
ITPRIPL1_chr2_96320317_96333353	0/0	c0012	1668	1	0	1	0	0	0	copy fasta	ITPRIPL1	chr2	96320317	96333353
ITPRIPL1_chr2_96320317_96333353	0/0	c0013	1668	1	1	0	0	0	0	copy fasta	ITPRIPL1	chr2	96320317	96333353
ITPRIPL2_chr16_19108964_19126629	1/1	c0001	1608	295	67	56	131	8	31	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	c0002	1608	14	13	0	0	0	1	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	c0003	1608	9	8	1	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	c0004	1608	2	2	0	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	c0005	1608	2	2	0	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	c0006	1608	2	2	0	0	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	c0007	1608	2	0	1	0	0	1	copy fasta	ITPRIPL2	chr16	19108964	19126629