JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ITPRIPL2_chr16_19108964_19126629	0/0	c0008	1608	2	0	0	2	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	c0009	1608	1	0	0	0	0	1	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIPL2_chr16_19108964_19126629	0/0	c0010	1608	1	0	0	1	0	0	copy fasta	ITPRIPL2	chr16	19108964	19126629
ITPRIP_chr10_104304700_104343465	1/0	c0001	1644	292	88	41	121	12	29	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	c0002	1644	15	0	8	0	4	3	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	c0003	1644	3	3	0	0	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	c0004	1644	3	0	0	3	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	c0005	1644	2	2	0	0	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	c0006	1644	1	1	0	0	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	c0007	1644	1	0	0	0	0	1	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	c0008	1644	1	0	0	1	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	c0009	1644	1	0	0	0	0	1	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	c0010	1644	1	0	0	1	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	c0011	1644	1	0	0	1	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	c0012	1644	1	0	1	0	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/0	c0013	1644	1	0	0	1	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITPRIP_chr10_104304700_104343465	0/1	c0014	1644	1	0	0	0	0	0	copy fasta	ITPRIP	chr10	104304700	104343465
ITSN1_chr21_33637501_33904861	0/1	c0001	5166	116	20	19	52	4	20	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	c0002	5166	45	23	6	13	0	3	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	1/0	c0003	5166	19	5	5	4	2	2	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	c0004	5166	11	3	1	5	1	1	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	c0005	5166	7	1	2	2	0	2	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	c0006	5166	7	4	2	0	0	1	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	c0007	5166	5	3	0	2	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	c0008	5166	3	3	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	c0009	5166	2	2	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	c0010	5166	2	2	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	c0011	5166	2	0	0	1	0	1	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	c0012	5166	2	0	2	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	c0013	5166	2	0	0	2	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	c0014	5166	1	0	1	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	c0015	5166	1	0	1	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	c0016	5166	1	1	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	c0017	5166	1	0	1	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	c0018	5166	1	1	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	c0019	5166	1	0	0	1	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	c0020	5166	1	1	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	c0021	5166	1	1	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	c0022	5166	1	0	1	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	c0023	5166	1	0	0	1	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	c0024	5166	1	0	1	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	c0025	5166	1	0	0	1	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	c0026	5166	1	0	0	0	1	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	c0027	5166	1	1	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	c0028	5166	1	0	1	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	c0029	5166	1	1	0	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	c0030	5166	1	0	0	1	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	c0031	5166	1	0	0	1	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN1_chr21_33637501_33904861	0/0	c0032	5166	1	0	1	0	0	0	copy fasta	ITSN1	chr21	33637501	33904861
ITSN2_chr2_24197864_24365536	1/1	c0001	5094	104	30	19	35	5	13	copy fasta	ITSN2	chr2	24197864	24365536