JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ITSN2_chr2_24197864_24365536	0/0	c0002	5094	31	0	4	17	2	8	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	c0003	5094	27	26	1	0	0	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	c0004	5094	25	4	7	8	3	3	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	c0005	5094	14	2	2	6	1	3	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	c0006	5094	3	2	1	0	0	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	c0007	5094	2	2	0	0	0	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	c0008	5094	2	0	0	2	0	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	c0009	5094	1	0	1	0	0	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	c0010	5094	1	1	0	0	0	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	c0011	5094	1	1	0	0	0	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	c0012	5094	1	0	0	0	1	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	c0013	5094	1	1	0	0	0	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	c0014	5094	1	1	0	0	0	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	c0015	5094	1	0	0	0	1	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	c0016	5094	1	1	0	0	0	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	c0017	5094	1	0	0	1	0	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	c0018	5094	1	0	0	0	0	1	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	c0019	5094	1	0	0	1	0	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	c0020	5094	1	0	0	1	0	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	c0021	5094	1	1	0	0	0	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	c0022	5094	1	0	0	0	1	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	c0023	5094	1	0	0	1	0	0	copy fasta	ITSN2	chr2	24197864	24365536
ITSN2_chr2_24197864_24365536	0/0	c0024	5094	1	0	1	0	0	0	copy fasta	ITSN2	chr2	24197864	24365536
IVD_chr15_40400795_40426308	1/1	c0001	1272	350	72	55	163	15	43	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	c0002	1272	22	9	11	0	1	1	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	c0003	1272	3	3	0	0	0	0	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	c0004	1272	1	0	0	1	0	0	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	c0005	1272	1	0	0	0	0	1	copy fasta	IVD	chr15	40400795	40426308
IVD_chr15_40400795_40426308	0/0	c0006	1272	1	0	0	0	0	1	copy fasta	IVD	chr15	40400795	40426308
IVL_chr1_152903546_152916886	0/0	c0001	1788	101	0	9	79	0	13	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	1/0	c0002	1758	96	21	20	40	4	10	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/1	c0003	1758	69	1	22	28	7	10	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0004	1788	25	23	2	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0005	1758	16	9	3	2	2	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0006	1848	15	0	3	12	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0007	1758	11	0	0	11	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0008	1758	9	0	9	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0009	1728	8	0	3	2	0	3	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0010	1758	6	6	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0011	1788	6	0	0	6	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0012	1758	5	5	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0013	1758	5	5	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0014	1758	4	4	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0015	1788	4	4	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0016	1818	4	0	0	4	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0017	1788	3	0	0	3	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0018	1758	2	2	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0019	1758	2	0	1	1	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0020	1758	2	2	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0021	1758	2	0	0	2	0	0	copy fasta	IVL	chr1	152903546	152916886