JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IVL_chr1_152903546_152916886	0/0	c0022	1788	2	0	1	1	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0023	1728	2	0	1	0	1	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0024	1818	2	2	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0025	1728	2	2	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0026	1788	2	2	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0027	1788	1	0	1	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0028	1728	1	0	0	1	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0029	1758	1	0	0	1	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0030	1758	1	0	0	1	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0031	1788	1	0	1	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0032	1698	1	1	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0033	1686	1	1	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0034	1790	1	0	0	1	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0035	1728	1	1	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0036	1848	1	0	0	1	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0037	1848	1	1	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0038	1818	1	1	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0039	1788	1	1	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0040	1788	1	1	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0041	1818	1	0	0	1	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0042	1788	1	0	0	1	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0043	1818	1	0	1	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0044	1818	1	1	0	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0045	1788	1	0	0	1	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0046	1849	1	0	0	1	0	0	copy fasta	IVL	chr1	152903546	152916886
IVL_chr1_152903546_152916886	0/0	c0047	1758	1	0	1	0	0	0	copy fasta	IVL	chr1	152903546	152916886
IVNS1ABP_chr1_185291388_185322243	1/1	c0001	1929	365	89	65	169	12	28	copy fasta	IVNS1ABP	chr1	185291388	185322243
IVNS1ABP_chr1_185291388_185322243	0/0	c0002	1929	2	2	0	0	0	0	copy fasta	IVNS1ABP	chr1	185291388	185322243
IVNS1ABP_chr1_185291388_185322243	0/0	c0003	1929	2	2	0	0	0	0	copy fasta	IVNS1ABP	chr1	185291388	185322243
IVNS1ABP_chr1_185291388_185322243	0/0	c0004	1929	2	0	0	0	0	2	copy fasta	IVNS1ABP	chr1	185291388	185322243
IVNS1ABP_chr1_185291388_185322243	0/0	c0005	1929	2	0	0	0	0	2	copy fasta	IVNS1ABP	chr1	185291388	185322243
IVNS1ABP_chr1_185291388_185322243	0/0	c0006	1929	1	0	0	1	0	0	copy fasta	IVNS1ABP	chr1	185291388	185322243
IVNS1ABP_chr1_185291388_185322243	0/0	c0007	1929	1	0	0	1	0	0	copy fasta	IVNS1ABP	chr1	185291388	185322243
IVNS1ABP_chr1_185291388_185322243	0/0	c0008	1929	1	1	0	0	0	0	copy fasta	IVNS1ABP	chr1	185291388	185322243
IVNS1ABP_chr1_185291388_185322243	0/0	c0009	1929	1	0	1	0	0	0	copy fasta	IVNS1ABP	chr1	185291388	185322243
IVNS1ABP_chr1_185291388_185322243	0/0	c0010	1929	1	1	0	0	0	0	copy fasta	IVNS1ABP	chr1	185291388	185322243
IVNS1ABP_chr1_185291388_185322243	0/0	c0011	1929	1	0	0	1	0	0	copy fasta	IVNS1ABP	chr1	185291388	185322243
IVNS1ABP_chr1_185291388_185322243	0/0	c0012	1929	1	1	0	0	0	0	copy fasta	IVNS1ABP	chr1	185291388	185322243
IWS1_chr2_127475812_127531489	1/1	c0001	2460	303	62	55	136	12	36	copy fasta	IWS1	chr2	127475812	127531489
IWS1_chr2_127475812_127531489	0/0	c0002	2460	7	7	0	0	0	0	copy fasta	IWS1	chr2	127475812	127531489
IWS1_chr2_127475812_127531489	0/0	c0003	2460	6	6	0	0	0	0	copy fasta	IWS1	chr2	127475812	127531489
IWS1_chr2_127475812_127531489	0/0	c0004	2460	5	4	1	0	0	0	copy fasta	IWS1	chr2	127475812	127531489
IWS1_chr2_127475812_127531489	0/0	c0005	2460	4	4	0	0	0	0	copy fasta	IWS1	chr2	127475812	127531489
IWS1_chr2_127475812_127531489	0/0	c0006	2460	4	4	0	0	0	0	copy fasta	IWS1	chr2	127475812	127531489
IWS1_chr2_127475812_127531489	0/0	c0007	2457	3	0	0	3	0	0	copy fasta	IWS1	chr2	127475812	127531489
IWS1_chr2_127475812_127531489	0/0	c0008	2460	3	3	0	0	0	0	copy fasta	IWS1	chr2	127475812	127531489
IWS1_chr2_127475812_127531489	0/0	c0009	2460	1	1	0	0	0	0	copy fasta	IWS1	chr2	127475812	127531489
IWS1_chr2_127475812_127531489	0/0	c0010	2460	1	1	0	0	0	0	copy fasta	IWS1	chr2	127475812	127531489
IWS1_chr2_127475812_127531489	0/0	c0011	2460	1	0	0	1	0	0	copy fasta	IWS1	chr2	127475812	127531489
IYD_chr6_150364012_150410969	1/1	c0001	870	374	62	70	178	14	48	copy fasta	IYD	chr6	150364012	150410969