JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
IYD_chr6_150364012_150410969	0/0	c0002	870	29	28	1	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	c0003	870	3	3	0	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	c0004	870	3	3	0	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	c0005	870	3	3	0	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IYD_chr6_150364012_150410969	0/0	c0006	870	2	1	1	0	0	0	copy fasta	IYD	chr6	150364012	150410969
IZUMO1R_chr11_94299580_94313146	1/1	c0001	753	404	68	77	193	18	46	copy fasta	IZUMO1R	chr11	94299580	94313146
IZUMO1R_chr11_94299580_94313146	0/0	c0002	753	27	21	1	3	0	2	copy fasta	IZUMO1R	chr11	94299580	94313146
IZUMO1R_chr11_94299580_94313146	0/0	c0003	753	15	0	0	15	0	0	copy fasta	IZUMO1R	chr11	94299580	94313146
IZUMO1R_chr11_94299580_94313146	0/0	c0004	753	8	8	0	0	0	0	copy fasta	IZUMO1R	chr11	94299580	94313146
IZUMO1R_chr11_94299580_94313146	0/0	c0005	753	2	0	0	2	0	0	copy fasta	IZUMO1R	chr11	94299580	94313146
IZUMO1R_chr11_94299580_94313146	0/0	c0006	753	1	1	0	0	0	0	copy fasta	IZUMO1R	chr11	94299580	94313146
IZUMO1R_chr11_94299580_94313146	0/0	c0007	753	1	0	0	1	0	0	copy fasta	IZUMO1R	chr11	94299580	94313146
IZUMO1_chr19_48735852_48751909	0/1	c0001	1053	234	29	39	135	8	22	copy fasta	IZUMO1	chr19	48735852	48751909
IZUMO1_chr19_48735852_48751909	1/0	c0002	1053	163	64	37	36	5	20	copy fasta	IZUMO1	chr19	48735852	48751909
IZUMO1_chr19_48735852_48751909	0/0	c0003	1053	10	0	0	9	1	0	copy fasta	IZUMO1	chr19	48735852	48751909
IZUMO1_chr19_48735852_48751909	0/0	c0004	1053	3	3	0	0	0	0	copy fasta	IZUMO1	chr19	48735852	48751909
IZUMO2_chr19_50147548_50168281	1/1	c0001	666	353	90	65	150	8	38	copy fasta	IZUMO2	chr19	50147548	50168281
IZUMO2_chr19_50147548_50168281	0/0	c0002	666	36	0	15	9	4	8	copy fasta	IZUMO2	chr19	50147548	50168281
IZUMO2_chr19_50147548_50168281	0/0	c0003	666	2	2	0	0	0	0	copy fasta	IZUMO2	chr19	50147548	50168281
IZUMO2_chr19_50147548_50168281	0/0	c0004	666	1	0	0	1	0	0	copy fasta	IZUMO2	chr19	50147548	50168281
IZUMO2_chr19_50147548_50168281	0/0	c0005	666	1	1	0	0	0	0	copy fasta	IZUMO2	chr19	50147548	50168281
IZUMO2_chr19_50147548_50168281	0/0	c0006	666	1	1	0	0	0	0	copy fasta	IZUMO2	chr19	50147548	50168281
IZUMO3_chr9_24537952_24550897	0/0	c0001	720	300	71	41	149	8	31	copy fasta	IZUMO3	chr9	24537952	24550897
IZUMO3_chr9_24537952_24550897	1/1	c0002	720	100	8	36	35	6	13	copy fasta	IZUMO3	chr9	24537952	24550897
IZUMO3_chr9_24537952_24550897	0/0	c0003	720	11	0	0	11	0	0	copy fasta	IZUMO3	chr9	24537952	24550897
IZUMO3_chr9_24537952_24550897	0/0	c0004	720	7	7	0	0	0	0	copy fasta	IZUMO3	chr9	24537952	24550897
IZUMO3_chr9_24537952_24550897	0/0	c0005	720	3	2	1	0	0	0	copy fasta	IZUMO3	chr9	24537952	24550897
IZUMO3_chr9_24537952_24550897	0/0	c0006	720	2	0	0	2	0	0	copy fasta	IZUMO3	chr9	24537952	24550897
IZUMO3_chr9_24537952_24550897	0/0	c0007	783	1	0	0	1	0	0	copy fasta	IZUMO3	chr9	24537952	24550897
IZUMO3_chr9_24537952_24550897	0/0	c0008	720	1	1	0	0	0	0	copy fasta	IZUMO3	chr9	24537952	24550897
IZUMO3_chr9_24537952_24550897	0/0	c0009	720	1	1	0	0	0	0	copy fasta	IZUMO3	chr9	24537952	24550897
IZUMO4_chr19_2091915_2104590	1/1	c0001	699	442	96	86	199	15	44	copy fasta	IZUMO4	chr19	2091915	2104590
IZUMO4_chr19_2091915_2104590	0/0	c0002	699	3	0	0	3	0	0	copy fasta	IZUMO4	chr19	2091915	2104590
IZUMO4_chr19_2091915_2104590	0/0	c0003	699	2	0	0	0	1	1	copy fasta	IZUMO4	chr19	2091915	2104590
IZUMO4_chr19_2091915_2104590	0/0	c0004	699	1	1	0	0	0	0	copy fasta	IZUMO4	chr19	2091915	2104590
IZUMO4_chr19_2091915_2104590	0/0	c0005	699	1	0	0	1	0	0	copy fasta	IZUMO4	chr19	2091915	2104590
IZUMO4_chr19_2091915_2104590	0/0	c0006	699	1	0	0	1	0	0	copy fasta	IZUMO4	chr19	2091915	2104590
IZUMO4_chr19_2091915_2104590	0/0	c0007	699	1	0	0	0	0	1	copy fasta	IZUMO4	chr19	2091915	2104590
IZUMO4_chr19_2091915_2104590	0/0	c0008	699	1	1	0	0	0	0	copy fasta	IZUMO4	chr19	2091915	2104590
IZUMO4_chr19_2091915_2104590	0/0	c0009	699	1	0	0	1	0	0	copy fasta	IZUMO4	chr19	2091915	2104590
IZUMO4_chr19_2091915_2104590	0/0	c0010	699	1	0	0	1	0	0	copy fasta	IZUMO4	chr19	2091915	2104590
JADE1_chr4_128804700_128880224	1/1	c0001	2529	254	67	56	94	9	26	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	c0002	2529	14	13	1	0	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	c0003	2529	4	3	1	0	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	c0004	2529	3	0	2	0	1	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	c0005	2529	1	0	0	1	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	c0006	2529	1	0	0	1	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE1_chr4_128804700_128880224	0/0	c0007	2529	1	1	0	0	0	0	copy fasta	JADE1	chr4	128804700	128880224
JADE2_chr5_134520670_134588227	1/1	c0001	2505	312	69	59	137	10	35	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	c0002	2505	50	1	11	30	1	7	copy fasta	JADE2	chr5	134520670	134588227