JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
JADE2_chr5_134520670_134588227	0/0	c0003	2505	10	10	0	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	c0004	2505	3	0	0	3	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	c0005	2505	3	3	0	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	c0006	2505	2	2	0	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	c0007	2505	1	0	0	1	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	c0008	2505	1	1	0	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	c0009	2505	1	0	1	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	c0010	2505	1	0	1	0	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	c0011	2505	1	0	0	0	1	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	c0012	2505	1	0	0	1	0	0	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	c0013	2505	1	0	0	0	0	1	copy fasta	JADE2	chr5	134520670	134588227
JADE2_chr5_134520670_134588227	0/0	c0014	2505	1	0	0	0	0	1	copy fasta	JADE2	chr5	134520670	134588227
JADE3_chrX_46907421_47066242	1/1	c0001	2472	256	62	43	115	11	23	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	c0002	2472	1	0	0	0	0	1	copy fasta	JADE3	chrX	46907421	47066242
JADE3_chrX_46907421_47066242	0/0	c0003	2472	1	0	0	1	0	0	copy fasta	JADE3	chrX	46907421	47066242
JAG1_chr20_10632684_10678999	1/0	c0001	3657	96	2	15	61	7	10	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0002	3657	39	3	11	16	5	4	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0003	3657	32	2	2	23	1	4	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0004	3657	30	12	12	1	1	4	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0005	3657	26	13	8	4	0	1	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0006	3657	21	20	1	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0007	3657	18	2	1	14	0	1	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/1	c0008	3657	17	2	3	9	0	2	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0009	3657	13	0	3	9	0	1	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0010	3657	11	2	0	8	0	1	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0011	3657	10	1	2	2	0	5	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0012	3657	7	6	1	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0013	3657	7	7	0	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0014	3657	4	0	3	0	0	1	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0015	3657	4	0	0	4	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0016	3657	4	4	0	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0017	3657	4	0	0	4	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0018	3657	4	3	0	1	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0019	3657	4	0	0	4	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0020	3657	3	0	0	3	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0021	3657	3	0	0	3	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0022	3657	3	0	3	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0023	3657	3	0	2	0	0	1	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0024	3657	3	3	0	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0025	3657	2	0	1	1	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0026	3657	2	1	1	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0027	3657	2	0	2	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0028	3657	2	2	0	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0029	3657	2	0	2	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0030	3657	2	0	1	0	1	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0031	3657	2	2	0	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0032	3657	2	0	1	0	0	1	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0033	3657	2	0	0	0	0	2	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0034	3657	2	2	0	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0035	3657	2	2	0	0	0	0	copy fasta	JAG1	chr20	10632684	10678999