JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
JAG1_chr20_10632684_10678999	0/0	c0036	3657	1	0	0	1	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0037	3657	1	0	1	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0038	3657	1	0	0	1	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0039	3657	1	0	0	0	1	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0040	3657	1	0	1	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0041	3657	1	0	0	1	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0042	3657	1	0	0	1	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0043	3657	1	1	0	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0044	3657	1	0	0	1	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0045	3657	1	0	0	1	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0046	3657	1	0	0	1	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0047	3657	1	0	0	0	0	1	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0048	3657	1	1	0	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0049	3657	1	0	1	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0050	3657	1	0	1	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0051	3657	1	0	1	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0052	3657	1	0	0	0	0	1	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0053	3657	1	0	0	0	0	1	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0054	3657	1	0	0	0	0	1	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0055	3657	1	1	0	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0056	3657	1	1	0	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0057	3657	1	1	0	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0058	3657	1	1	0	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG1_chr20_10632684_10678999	0/0	c0059	3657	1	1	0	0	0	0	copy fasta	JAG1	chr20	10632684	10678999
JAG2_chr14_105135995_105173776	0/0	c0001	3717	125	37	27	46	5	10	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	1/0	c0002	3717	116	13	20	56	9	17	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/1	c0003	3717	36	0	5	24	0	6	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0004	3717	9	0	0	9	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0005	3717	9	9	0	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0006	3717	8	0	6	2	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0007	3717	7	7	0	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0008	3717	7	0	6	1	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0009	3717	5	5	0	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0010	3717	4	0	0	4	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0011	3717	4	4	0	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0012	3717	4	4	0	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0013	3717	3	0	0	2	0	1	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0014	3717	2	2	0	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0015	3717	2	2	0	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0016	3717	2	0	0	1	0	1	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0017	3717	2	2	0	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0018	3717	1	0	0	1	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0019	3717	1	0	0	1	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0020	3717	1	0	0	1	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0021	3717	1	1	0	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0022	3717	1	1	0	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0023	3717	1	0	1	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0024	3717	1	0	1	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0025	3717	1	0	0	0	0	1	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0026	3717	1	0	1	0	0	0	copy fasta	JAG2	chr14	105135995	105173776