JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
JAG2_chr14_105135995_105173776	0/0	c0027	3717	1	0	1	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0028	3717	1	0	0	1	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0029	3717	1	1	0	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0030	3717	1	1	0	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0031	3717	1	0	0	1	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0032	3717	1	0	1	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0033	3717	1	0	1	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0034	3717	1	1	0	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0035	3717	1	1	0	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAG2_chr14_105135995_105173776	0/0	c0036	3717	1	1	0	0	0	0	copy fasta	JAG2	chr14	105135995	105173776
JAGN1_chr3_9885610_9899349	0/0	c0001	552	256	63	46	106	13	28	copy fasta	JAGN1	chr3	9885610	9899349
JAGN1_chr3_9885610_9899349	1/0	c0002	552	126	27	27	56	3	12	copy fasta	JAGN1	chr3	9885610	9899349
JAGN1_chr3_9885610_9899349	0/1	c0003	552	6	0	4	0	0	1	copy fasta	JAGN1	chr3	9885610	9899349
JAGN1_chr3_9885610_9899349	0/0	c0004	552	5	5	0	0	0	0	copy fasta	JAGN1	chr3	9885610	9899349
JAGN1_chr3_9885610_9899349	0/0	c0005	552	3	0	1	0	0	2	copy fasta	JAGN1	chr3	9885610	9899349
JAGN1_chr3_9885610_9899349	0/0	c0006	552	2	0	0	2	0	0	copy fasta	JAGN1	chr3	9885610	9899349
JAGN1_chr3_9885610_9899349	0/0	c0007	552	1	1	0	0	0	0	copy fasta	JAGN1	chr3	9885610	9899349
JAGN1_chr3_9885610_9899349	0/0	c0008	552	1	0	0	0	0	1	copy fasta	JAGN1	chr3	9885610	9899349
JAK1_chr1_64828229_64971549	0/0	c0001	3465	109	42	14	38	1	14	copy fasta	JAK1	chr1	64828229	64971549
JAK1_chr1_64828229_64971549	1/0	c0002	3465	98	10	16	55	3	13	copy fasta	JAK1	chr1	64828229	64971549
JAK1_chr1_64828229_64971549	0/0	c0003	3465	69	17	14	31	3	4	copy fasta	JAK1	chr1	64828229	64971549
JAK1_chr1_64828229_64971549	0/0	c0004	3465	14	0	9	1	3	1	copy fasta	JAK1	chr1	64828229	64971549
JAK1_chr1_64828229_64971549	0/0	c0005	3465	13	8	3	0	0	2	copy fasta	JAK1	chr1	64828229	64971549
JAK1_chr1_64828229_64971549	0/1	c0006	3465	8	2	1	0	2	2	copy fasta	JAK1	chr1	64828229	64971549
JAK1_chr1_64828229_64971549	0/0	c0007	3465	5	5	0	0	0	0	copy fasta	JAK1	chr1	64828229	64971549
JAK1_chr1_64828229_64971549	0/0	c0008	3465	1	1	0	0	0	0	copy fasta	JAK1	chr1	64828229	64971549
JAK1_chr1_64828229_64971549	0/0	c0009	3465	1	1	0	0	0	0	copy fasta	JAK1	chr1	64828229	64971549
JAK1_chr1_64828229_64971549	0/0	c0010	3465	1	0	0	0	0	1	copy fasta	JAK1	chr1	64828229	64971549
JAK1_chr1_64828229_64971549	0/0	c0011	3465	1	0	0	0	0	1	copy fasta	JAK1	chr1	64828229	64971549
JAK1_chr1_64828229_64971549	0/0	c0012	3465	1	0	0	1	0	0	copy fasta	JAK1	chr1	64828229	64971549
JAK1_chr1_64828229_64971549	0/0	c0013	3465	1	0	0	0	0	1	copy fasta	JAK1	chr1	64828229	64971549
JAK1_chr1_64828229_64971549	0/0	c0014	3465	1	0	0	1	0	0	copy fasta	JAK1	chr1	64828229	64971549
JAK1_chr1_64828229_64971549	0/0	c0015	3465	1	0	0	1	0	0	copy fasta	JAK1	chr1	64828229	64971549
JAK1_chr1_64828229_64971549	0/0	c0016	3465	1	0	0	0	0	1	copy fasta	JAK1	chr1	64828229	64971549
JAK1_chr1_64828229_64971549	0/0	c0017	3465	1	0	1	0	0	0	copy fasta	JAK1	chr1	64828229	64971549
JAK2_chr9_4980272_5134948	1/0	c0001	3399	125	2	25	77	5	15	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/1	c0002	3399	111	28	21	49	0	12	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	c0003	3399	84	30	22	21	3	8	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	c0004	3399	16	14	2	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	c0005	3399	5	5	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	c0006	3399	4	2	2	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	c0007	3399	3	0	3	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	c0008	3399	2	0	0	2	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	c0009	3399	2	2	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	c0010	3399	2	2	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	c0011	3399	1	0	0	1	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	c0012	3399	1	1	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	c0013	3399	1	0	0	1	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	c0014	3399	1	1	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	c0015	3399	1	0	0	1	0	0	copy fasta	JAK2	chr9	4980272	5134948