JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
JAK2_chr9_4980272_5134948	0/0	c0016	3399	1	0	0	1	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	c0017	3399	1	0	0	1	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	c0018	3399	1	1	0	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	c0019	3399	1	0	0	0	0	1	copy fasta	JAK2	chr9	4980272	5134948
JAK2_chr9_4980272_5134948	0/0	c0020	3399	1	0	1	0	0	0	copy fasta	JAK2	chr9	4980272	5134948
JAK3_chr19_17819782_17852982	1/1	c0001	3375	376	85	71	156	18	44	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	c0002	3376	7	0	2	4	0	1	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	c0003	3375	6	6	0	0	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	c0004	3375	5	0	0	5	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	c0005	3375	3	0	0	3	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	c0006	3375	2	0	2	0	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	c0007	3375	2	0	1	0	0	1	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	c0008	3375	2	0	0	0	0	2	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	c0009	3375	2	0	0	2	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	c0010	3375	1	1	0	0	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	c0011	3375	1	1	0	0	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	c0012	3376	1	1	0	0	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	c0013	3375	1	1	0	0	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	c0014	3375	1	0	0	1	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	c0015	3375	1	0	0	1	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	c0016	3375	1	0	0	1	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	c0017	3375	1	1	0	0	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAK3_chr19_17819782_17852982	0/0	c0018	3376	1	0	0	1	0	0	copy fasta	JAK3	chr19	17819782	17852982
JAKMIP1_chr4_6021199_6205549	1/0	c0001	2496	207	63	40	66	14	23	copy fasta	JAKMIP1	chr4	6021199	6205549
JAKMIP1_chr4_6021199_6205549	0/0	c0002	2496	11	10	1	0	0	0	copy fasta	JAKMIP1	chr4	6021199	6205549
JAKMIP1_chr4_6021199_6205549	0/0	c0003	2496	5	5	0	0	0	0	copy fasta	JAKMIP1	chr4	6021199	6205549
JAKMIP1_chr4_6021199_6205549	0/0	c0004	2496	1	0	0	0	0	1	copy fasta	JAKMIP1	chr4	6021199	6205549
JAKMIP1_chr4_6021199_6205549	0/0	c0005	2496	1	0	0	1	0	0	copy fasta	JAKMIP1	chr4	6021199	6205549
JAKMIP1_chr4_6021199_6205549	0/0	c0006	2496	1	0	0	1	0	0	copy fasta	JAKMIP1	chr4	6021199	6205549
JAKMIP1_chr4_6021199_6205549	0/0	c0007	2496	1	0	0	1	0	0	copy fasta	JAKMIP1	chr4	6021199	6205549
JAKMIP1_chr4_6021199_6205549	0/0	c0008	2496	1	1	0	0	0	0	copy fasta	JAKMIP1	chr4	6021199	6205549
JAKMIP1_chr4_6021199_6205549	0/0	c0009	2496	1	0	0	0	0	1	copy fasta	JAKMIP1	chr4	6021199	6205549
JAKMIP1_chr4_6021199_6205549	0/0	c0010	2496	1	0	1	0	0	0	copy fasta	JAKMIP1	chr4	6021199	6205549
JAKMIP1_chr4_6021199_6205549	0/0	c0011	2496	1	0	0	1	0	0	copy fasta	JAKMIP1	chr4	6021199	6205549
JAKMIP1_chr4_6021199_6205549	0/0	c0012	2496	1	0	0	0	0	1	copy fasta	JAKMIP1	chr4	6021199	6205549
JAKMIP1_chr4_6021199_6205549	0/0	c0013	2496	1	1	0	0	0	0	copy fasta	JAKMIP1	chr4	6021199	6205549
JAKMIP2_chr5_147580438_147787728	1/1	c0001	2463	100	16	20	47	6	9	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	c0002	2463	45	18	3	22	0	2	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	c0003	2463	25	5	0	20	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	c0004	2463	21	1	9	6	1	4	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	c0005	2463	13	13	0	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	c0006	2463	10	0	0	10	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	c0007	2463	10	0	5	1	3	1	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	c0008	2463	9	0	2	7	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	c0009	2463	4	2	0	2	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	c0010	2463	2	1	1	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	c0011	2463	2	0	2	0	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	c0012	2463	2	0	0	2	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	c0013	2463	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728
JAKMIP2_chr5_147580438_147787728	0/0	c0014	2463	1	0	0	1	0	0	copy fasta	JAKMIP2	chr5	147580438	147787728