JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
ALPG_chr2_232401844_232415714	0/0	c0020	1599	1	0	0	0	0	1	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	c0021	1599	1	0	0	1	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	c0022	1599	1	0	0	1	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	c0023	1599	1	0	0	1	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	c0024	1599	1	1	0	0	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	c0025	1599	1	1	0	0	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	c0026	1599	1	1	0	0	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	c0027	1599	1	1	0	0	0	0	copy fasta	ALPG	chr2	232401844	232415714
ALPG_chr2_232401844_232415714	0/0	c0028	1599	1	0	0	0	0	1	copy fasta	ALPG	chr2	232401844	232415714
ALPI_chr2_232451153_232465753	1/1	c0001	1587	357	62	60	174	18	41	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	c0002	1587	47	8	15	18	0	6	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	c0003	1587	18	18	0	0	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	c0004	1587	5	0	0	5	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	c0005	1587	5	0	0	5	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	c0006	1587	4	4	0	0	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	c0007	1587	1	1	0	0	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	c0008	1587	1	0	0	1	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	c0009	1587	1	1	0	0	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	c0010	1587	1	1	0	0	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	c0011	1587	1	0	0	0	0	1	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	c0012	1587	1	1	0	0	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	c0013	1587	1	0	1	0	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	c0014	1587	1	0	0	1	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	c0015	1587	1	1	0	0	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPI_chr2_232451153_232465753	0/0	c0016	1587	1	1	0	0	0	0	copy fasta	ALPI	chr2	232451153	232465753
ALPK1_chr4_112292369_112447621	0/1	c0001	3735	150	41	22	64	7	15	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	1/0	c0002	3735	65	8	19	28	1	8	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0003	3735	14	1	9	0	2	2	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0004	3735	13	0	4	9	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0005	3732	7	0	1	5	0	1	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0006	3735	6	0	0	6	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0007	3735	5	1	1	0	0	3	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0008	3735	3	3	0	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0009	3735	3	0	3	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0010	3735	3	3	0	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0011	3735	3	3	0	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0012	3735	3	1	2	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0013	3735	3	1	1	0	0	1	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0014	3735	3	3	0	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0015	3735	2	1	1	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0016	3735	2	2	0	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0017	3735	2	2	0	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0018	3735	1	1	0	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0019	3735	1	0	0	1	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0020	3735	1	0	0	0	0	1	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0021	3735	1	1	0	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0022	3735	1	1	0	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0023	3735	1	1	0	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0024	3735	1	1	0	0	0	0	copy fasta	ALPK1	chr4	112292369	112447621
ALPK1_chr4_112292369_112447621	0/0	c0025	3735	1	0	0	1	0	0	copy fasta	ALPK1	chr4	112292369	112447621