JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
JAKMIP3_chr10_132060946_132189858	0/0	c0046	2531	1	0	0	0	0	1	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/1	c0047	2541	1	0	0	0	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	c0048	2580	1	1	0	0	0	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	c0049	2541	1	0	0	0	1	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	c0050	2541	1	0	0	0	1	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAKMIP3_chr10_132060946_132189858	0/0	c0051	2541	1	0	0	0	1	0	copy fasta	JAKMIP3	chr10	132060946	132189858
JAM2_chr21_25634258_25722562	1/1	c0001	897	246	67	46	99	7	25	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	c0002	897	56	2	3	43	3	5	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	c0003	897	11	11	0	0	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	c0004	897	7	6	1	0	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	c0005	897	2	0	0	0	0	2	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	c0006	897	2	2	0	0	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	c0007	897	2	2	0	0	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM2_chr21_25634258_25722562	0/0	c0008	897	2	2	0	0	0	0	copy fasta	JAM2	chr21	25634258	25722562
JAM3_chr11_134064072_134157001	1/1	c0001	933	375	82	78	162	12	39	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	c0002	933	5	0	0	5	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	c0003	933	4	4	0	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	c0004	933	1	0	0	1	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	c0005	933	1	0	0	1	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	c0006	933	1	1	0	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	c0007	933	1	0	0	0	0	1	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	c0008	933	1	1	0	0	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAM3_chr11_134064072_134157001	0/0	c0009	933	1	0	0	1	0	0	copy fasta	JAM3	chr11	134064072	134157001
JAML_chr11_118188725_118230011	0/1	c0001	1185	134	11	23	72	5	22	copy fasta	JAML	chr11	118188725	118230011
JAML_chr11_118188725_118230011	1/0	c0002	1185	95	2	17	59	6	10	copy fasta	JAML	chr11	118188725	118230011
JAML_chr11_118188725_118230011	0/0	c0003	1185	80	26	19	31	1	3	copy fasta	JAML	chr11	118188725	118230011
JAML_chr11_118188725_118230011	0/0	c0004	1185	59	47	5	6	0	1	copy fasta	JAML	chr11	118188725	118230011
JAML_chr11_118188725_118230011	0/0	c0005	1185	3	3	0	0	0	0	copy fasta	JAML	chr11	118188725	118230011
JAML_chr11_118188725_118230011	0/0	c0006	1185	2	1	1	0	0	0	copy fasta	JAML	chr11	118188725	118230011
JAML_chr11_118188725_118230011	0/0	c0007	1185	1	0	1	0	0	0	copy fasta	JAML	chr11	118188725	118230011
JARID2_chr6_15241069_15527042	1/0	c0001	3741	98	41	16	29	3	8	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	c0002	3741	90	28	7	43	1	11	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	c0003	3741	36	2	7	20	1	6	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	c0004	3741	12	0	0	12	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/1	c0005	3741	12	1	2	0	2	6	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	c0006	3741	9	8	1	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	c0007	3741	7	2	4	0	1	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	c0008	3741	2	0	2	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	c0009	3741	2	2	0	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	c0010	3741	2	2	0	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	c0011	3741	1	0	1	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	c0012	3741	1	1	0	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	c0013	3741	1	0	0	1	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	c0014	3741	1	0	1	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	c0015	3741	1	0	1	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	c0016	3741	1	0	1	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	c0017	3741	1	0	0	0	0	1	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	c0018	3741	1	1	0	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	c0019	3741	1	0	1	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	c0020	3741	1	1	0	0	0	0	copy fasta	JARID2	chr6	15241069	15527042