JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
JARID2_chr6_15241069_15527042	0/0	c0021	3741	1	0	0	1	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	c0022	3741	1	0	0	1	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	c0023	3741	1	0	0	1	0	0	copy fasta	JARID2	chr6	15241069	15527042
JARID2_chr6_15241069_15527042	0/0	c0024	3741	1	1	0	0	0	0	copy fasta	JARID2	chr6	15241069	15527042
JAZF1_chr7_27825577_28185795	1/1	c0001	732	205	84	42	47	10	20	copy fasta	JAZF1	chr7	27825577	28185795
JAZF1_chr7_27825577_28185795	0/0	c0002	732	1	0	0	1	0	0	copy fasta	JAZF1	chr7	27825577	28185795
JCAD_chr10_30007803_30064586	1/0	c0001	4080	96	3	10	67	3	12	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/1	c0002	4080	71	9	17	38	4	2	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0003	4080	45	2	10	30	1	2	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0004	4080	39	2	20	5	5	7	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0005	4080	27	18	3	4	0	2	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0006	4080	22	16	4	0	1	1	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0007	4080	19	1	1	16	0	1	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0008	4080	13	13	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0009	4080	7	6	1	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0010	4080	5	5	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0011	4083	3	3	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0012	4080	3	0	0	2	0	1	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0013	4080	2	0	2	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0014	4080	2	0	0	2	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0015	4080	2	0	2	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0016	4080	2	2	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0017	4080	2	2	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0018	4083	2	2	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0019	4080	2	0	0	1	0	1	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0020	4080	2	0	0	2	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0021	4080	1	0	0	1	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0022	4080	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0023	4080	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0024	4080	1	0	0	1	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0025	4080	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0026	4080	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0027	4080	1	0	1	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0028	4080	1	0	0	0	0	1	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0029	4083	1	0	0	1	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0030	4080	1	0	0	1	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0031	4080	1	0	0	0	0	1	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0032	4083	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0033	4080	1	0	0	1	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0034	4080	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0035	4080	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0036	4080	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0037	4080	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0038	4080	1	0	0	0	0	1	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0039	4080	1	0	0	1	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0040	4080	1	0	0	1	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0041	4080	1	0	0	1	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0042	4080	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0043	4080	1	0	1	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0044	4080	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586