JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	chapid	clen	total	AFR	AMR	EAS	EUR	SAS	cseq	genename	chr	start	end
JCAD_chr10_30007803_30064586	0/0	c0045	4080	1	0	0	1	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0046	4080	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0047	4080	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0048	4080	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0049	4080	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0050	4080	1	1	0	0	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0051	4080	1	0	0	1	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCAD_chr10_30007803_30064586	0/0	c0052	4080	1	0	0	1	0	0	copy fasta	JCAD	chr10	30007803	30064586
JCHAIN_chr4_70650541_70671508	1/1	c0001	480	358	90	60	157	10	39	copy fasta	JCHAIN	chr4	70650541	70671508
JCHAIN_chr4_70650541_70671508	0/0	c0002	480	5	5	0	0	0	0	copy fasta	JCHAIN	chr4	70650541	70671508
JCHAIN_chr4_70650541_70671508	0/0	c0003	480	1	0	0	0	0	1	copy fasta	JCHAIN	chr4	70650541	70671508
JCHAIN_chr4_70650541_70671508	0/0	c0004	480	1	0	0	1	0	0	copy fasta	JCHAIN	chr4	70650541	70671508
JCHAIN_chr4_70650541_70671508	0/0	c0005	480	1	1	0	0	0	0	copy fasta	JCHAIN	chr4	70650541	70671508
JDP2_chr14_75423022_75479107	0/0	c0001	492	206	61	32	85	9	19	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	1/1	c0002	492	149	24	36	63	7	17	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	c0003	492	1	1	0	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	c0004	492	1	1	0	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JDP2_chr14_75423022_75479107	0/0	c0005	492	1	1	0	0	0	0	copy fasta	JDP2	chr14	75423022	75479107
JHY_chr11_122877759_122968862	1/0	c0001	2337	226	69	30	91	10	25	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/1	c0002	2337	55	6	12	26	4	6	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	c0003	2337	24	0	1	16	0	7	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	c0004	2337	5	5	0	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	c0005	2337	4	0	0	4	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	c0006	2337	4	3	1	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	c0007	2337	2	2	0	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	c0008	2337	2	2	0	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	c0009	2337	1	0	0	1	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	c0010	2337	1	1	0	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	c0011	2337	1	1	0	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	c0012	2337	1	1	0	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	c0013	2337	1	0	0	1	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	c0014	2337	1	1	0	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	c0015	2337	1	0	0	0	0	1	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	c0016	2337	1	0	0	1	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	c0017	2337	1	1	0	0	0	0	copy fasta	JHY	chr11	122877759	122968862
JHY_chr11_122877759_122968862	0/0	c0018	2337	1	0	0	0	0	1	copy fasta	JHY	chr11	122877759	122968862
JKAMP_chr14_59479517_59510410	1/1	c0001	936	348	87	76	135	14	34	copy fasta	JKAMP	chr14	59479517	59510410
JKAMP_chr14_59479517_59510410	0/0	c0002	936	6	6	0	0	0	0	copy fasta	JKAMP	chr14	59479517	59510410
JKAMP_chr14_59479517_59510410	0/0	c0003	936	2	0	0	0	0	2	copy fasta	JKAMP	chr14	59479517	59510410
JKAMP_chr14_59479517_59510410	0/0	c0004	936	1	0	0	1	0	0	copy fasta	JKAMP	chr14	59479517	59510410
JKAMP_chr14_59479517_59510410	0/0	c0005	936	1	1	0	0	0	0	copy fasta	JKAMP	chr14	59479517	59510410
JMJD1C_chr10_63162225_63470977	0/0	c0001	7623	102	22	23	44	2	11	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0002	7623	82	10	16	40	7	9	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0003	7617	34	0	5	27	1	1	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0004	7623	18	3	6	1	5	3	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/1	c0005	7623	11	6	3	0	1	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0006	7620	8	7	1	0	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0007	7623	8	0	0	8	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0008	7623	5	5	0	0	0	0	copy fasta	JMJD1C	chr10	63162225	63470977
JMJD1C_chr10_63162225_63470977	0/0	c0009	7617	5	0	0	5	0	0	copy fasta	JMJD1C	chr10	63162225	63470977